Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
CUX1P39880 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
CUX1P39880 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.84
CUX1P39880 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
CUX1P39880 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC32.76■■■□□ 2.83
CUX1P39880 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC32.76■■■□□ 2.83
CUX1P39880 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC32.76■■■□□ 2.83
CUX1P39880 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC32.75■■■□□ 2.83
CUX1P39880 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC32.75■■■□□ 2.83
CUX1P39880 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC32.75■■■□□ 2.83
CUX1P39880 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC32.75■■■□□ 2.83
CUX1P39880 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CUX1P39880 AC026310.3-201ENST00000625186 2373 ntBASIC32.74■■■□□ 2.83
CUX1P39880 PHB2-202ENST00000440277 996 ntTSL 5 BASIC32.74■■■□□ 2.83
CUX1P39880 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC32.74■■■□□ 2.83
CUX1P39880 VPS72-207ENST00000640458 689 ntTSL 5 BASIC32.74■■■□□ 2.83
CUX1P39880 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CUX1P39880 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC32.74■■■□□ 2.83
CUX1P39880 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CUX1P39880 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC32.73■■■□□ 2.83
CUX1P39880 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
CUX1P39880 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
CUX1P39880 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CUX1P39880 NDUFV2-AS1-203ENST00000608008 779 ntBASIC32.73■■■□□ 2.83
CUX1P39880 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CUX1P39880 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC32.73■■■□□ 2.83
CUX1P39880 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CUX1P39880 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC32.73■■■□□ 2.83
CUX1P39880 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC32.73■■■□□ 2.83
CUX1P39880 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
CUX1P39880 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
CUX1P39880 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC32.72■■■□□ 2.83
CUX1P39880 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC32.72■■■□□ 2.83
CUX1P39880 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC32.72■■■□□ 2.83
CUX1P39880 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC32.72■■■□□ 2.83
CUX1P39880 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC32.72■■■□□ 2.83
CUX1P39880 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC32.72■■■□□ 2.83
CUX1P39880 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
CUX1P39880 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC32.72■■■□□ 2.83
CUX1P39880 AC079834.2-201ENST00000609776 1949 ntBASIC32.72■■■□□ 2.83
CUX1P39880 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC32.72■■■□□ 2.83
CUX1P39880 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CUX1P39880 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC32.71■■■□□ 2.83
CUX1P39880 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC32.71■■■□□ 2.83
CUX1P39880 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CUX1P39880 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC32.71■■■□□ 2.83
CUX1P39880 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CUX1P39880 TBC1D3P2-202ENST00000577902 1649 ntBASIC32.71■■■□□ 2.83
CUX1P39880 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC32.71■■■□□ 2.83
CUX1P39880 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC32.71■■■□□ 2.83
CUX1P39880 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC32.71■■■□□ 2.83
CUX1P39880 PP7080-204ENST00000510714 601 ntTSL 3 BASIC32.71■■■□□ 2.83
CUX1P39880 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CUX1P39880 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC32.7■■■□□ 2.83
CUX1P39880 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
CUX1P39880 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
CUX1P39880 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC32.7■■■□□ 2.83
CUX1P39880 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC32.7■■■□□ 2.83
CUX1P39880 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
CUX1P39880 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
CUX1P39880 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC32.7■■■□□ 2.83
CUX1P39880 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
CUX1P39880 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
CUX1P39880 LINC01311-201ENST00000565162 1445 ntBASIC32.7■■■□□ 2.82
CUX1P39880 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC32.7■■■□□ 2.82
CUX1P39880 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC32.69■■■□□ 2.82
CUX1P39880 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC32.69■■■□□ 2.82
CUX1P39880 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC32.69■■■□□ 2.82
CUX1P39880 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC32.69■■■□□ 2.82
CUX1P39880 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC32.69■■■□□ 2.82
CUX1P39880 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CUX1P39880 AC246785.2-201ENST00000432512 513 ntBASIC32.69■■■□□ 2.82
CUX1P39880 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CUX1P39880 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC32.69■■■□□ 2.82
CUX1P39880 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC32.68■■■□□ 2.82
CUX1P39880 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
CUX1P39880 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
CUX1P39880 HBZP1-201ENST00000354915 429 ntBASIC32.68■■■□□ 2.82
CUX1P39880 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
CUX1P39880 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC32.68■■■□□ 2.82
CUX1P39880 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
CUX1P39880 STK25-234ENST00000535007 2459 ntTSL 2 BASIC32.68■■■□□ 2.82
CUX1P39880 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CUX1P39880 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CUX1P39880 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC32.68■■■□□ 2.82
CUX1P39880 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CUX1P39880 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC32.67■■■□□ 2.82
CUX1P39880 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC32.67■■■□□ 2.82
CUX1P39880 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
CUX1P39880 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC32.67■■■□□ 2.82
CUX1P39880 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
CUX1P39880 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC32.67■■■□□ 2.82
CUX1P39880 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
CUX1P39880 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms