Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.48■□□□□ 0.23
USF1P22415 AC113347.1-201ENST00000413321 391 ntBASIC16.48■□□□□ 0.23
USF1P22415 KRT18P35-201ENST00000510488 1269 ntBASIC16.48■□□□□ 0.23
USF1P22415 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.48■□□□□ 0.23
USF1P22415 AL031985.4-201ENST00000642138 673 ntBASIC16.48■□□□□ 0.23
USF1P22415 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.48■□□□□ 0.23
USF1P22415 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
USF1P22415 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.48■□□□□ 0.23
USF1P22415 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.48■□□□□ 0.23
USF1P22415 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
USF1P22415 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.48■□□□□ 0.23
USF1P22415 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 AL390955.1-201ENST00000428694 934 ntBASIC16.47■□□□□ 0.23
USF1P22415 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.47■□□□□ 0.23
USF1P22415 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.47■□□□□ 0.23
USF1P22415 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.47■□□□□ 0.23
USF1P22415 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USF1P22415 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
USF1P22415 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
USF1P22415 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.46■□□□□ 0.23
USF1P22415 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.46■□□□□ 0.23
USF1P22415 AL137013.1-201ENST00000432946 1228 ntBASIC16.46■□□□□ 0.23
USF1P22415 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.46■□□□□ 0.23
USF1P22415 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.46■□□□□ 0.23
USF1P22415 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.46■□□□□ 0.23
USF1P22415 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.46■□□□□ 0.23
USF1P22415 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.46■□□□□ 0.23
USF1P22415 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.46■□□□□ 0.23
USF1P22415 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.46■□□□□ 0.23
USF1P22415 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
USF1P22415 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.46■□□□□ 0.23
USF1P22415 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.46■□□□□ 0.23
USF1P22415 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USF1P22415 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
USF1P22415 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
USF1P22415 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
USF1P22415 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.45■□□□□ 0.22
USF1P22415 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.45■□□□□ 0.22
USF1P22415 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.45■□□□□ 0.22
USF1P22415 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
USF1P22415 FSCN1P1-201ENST00000568912 1481 ntBASIC16.45■□□□□ 0.22
USF1P22415 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.45■□□□□ 0.22
USF1P22415 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
USF1P22415 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
USF1P22415 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
USF1P22415 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
USF1P22415 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.45■□□□□ 0.22
USF1P22415 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.45■□□□□ 0.22
USF1P22415 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms