Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.42■■□□□ 1.02
TPM1P09493 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
TPM1P09493 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
TPM1P09493 KRT18P68-201ENST00000392293 1000 ntBASIC21.42■■□□□ 1.02
TPM1P09493 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 RARRES2P4-201ENST00000514074 484 ntBASIC21.42■■□□□ 1.02
TPM1P09493 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
TPM1P09493 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.42■■□□□ 1.02
TPM1P09493 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
TPM1P09493 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 AL138781.2-201ENST00000617896 1843 ntBASIC21.42■■□□□ 1.02
TPM1P09493 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
TPM1P09493 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
TPM1P09493 AC079598.2-202ENST00000546624 1451 ntBASIC21.41■■□□□ 1.02
TPM1P09493 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
TPM1P09493 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.41■■□□□ 1.02
TPM1P09493 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TPM1P09493 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TPM1P09493 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.41■■□□□ 1.02
TPM1P09493 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 KRT18P61-201ENST00000585825 1298 ntBASIC21.41■■□□□ 1.02
TPM1P09493 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.41■■□□□ 1.02
TPM1P09493 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TPM1P09493 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.4■■□□□ 1.02
TPM1P09493 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
TPM1P09493 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.4■■□□□ 1.02
TPM1P09493 MIR638-201ENST00000385237 100 ntBASIC21.4■■□□□ 1.02
TPM1P09493 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.4■■□□□ 1.02
TPM1P09493 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.4■■□□□ 1.02
TPM1P09493 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.4■■□□□ 1.02
TPM1P09493 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
TPM1P09493 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TPM1P09493 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TPM1P09493 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
TPM1P09493 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TPM1P09493 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
TPM1P09493 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
TPM1P09493 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
TPM1P09493 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.39■■□□□ 1.02
TPM1P09493 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.39■■□□□ 1.02
TPM1P09493 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.02
TPM1P09493 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TPM1P09493 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TPM1P09493 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TPM1P09493 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TPM1P09493 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 OR6D1P-202ENST00000641007 5290 ntBASIC21.39■■□□□ 1.01
TPM1P09493 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.39■■□□□ 1.01
TPM1P09493 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.39■■□□□ 1.01
TPM1P09493 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.01
TPM1P09493 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms