Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.94■□□□□ 0.62
HDAC3O15379 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.94■□□□□ 0.62
HDAC3O15379 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC3O15379 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
HDAC3O15379 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC3O15379 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 DUX4L16-201ENST00000555130 1264 ntBASIC18.94■□□□□ 0.62
HDAC3O15379 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.94■□□□□ 0.62
HDAC3O15379 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC3O15379 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC3O15379 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HDAC3O15379 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC3O15379 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.94■□□□□ 0.62
HDAC3O15379 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC3O15379 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.93■□□□□ 0.62
HDAC3O15379 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HDAC3O15379 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 AC020763.4-201ENST00000623414 4170 ntBASIC18.93■□□□□ 0.62
HDAC3O15379 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.93■□□□□ 0.62
HDAC3O15379 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.93■□□□□ 0.62
HDAC3O15379 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.93■□□□□ 0.62
HDAC3O15379 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.93■□□□□ 0.62
HDAC3O15379 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HDAC3O15379 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.93■□□□□ 0.62
HDAC3O15379 AC007613.1-201ENST00000572811 2597 ntBASIC18.93■□□□□ 0.62
HDAC3O15379 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HDAC3O15379 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.93■□□□□ 0.62
HDAC3O15379 AC104581.1-202ENST00000635932 2618 ntBASIC18.93■□□□□ 0.62
HDAC3O15379 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
HDAC3O15379 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC3O15379 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 AC009113.1-201ENST00000570267 2443 ntBASIC18.92■□□□□ 0.62
HDAC3O15379 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 AC005082.1-201ENST00000413042 2259 ntBASIC18.92■□□□□ 0.62
HDAC3O15379 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.92■□□□□ 0.62
HDAC3O15379 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 AC034268.1-201ENST00000441047 882 ntBASIC18.92■□□□□ 0.62
HDAC3O15379 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 AC137761.2-201ENST00000561729 223 ntBASIC18.92■□□□□ 0.62
HDAC3O15379 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 AC145350.3-201ENST00000569033 163 ntBASIC18.92■□□□□ 0.62
HDAC3O15379 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
HDAC3O15379 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC3O15379 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HDAC3O15379 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HDAC3O15379 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.92■□□□□ 0.62
HDAC3O15379 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.92■□□□□ 0.62
HDAC3O15379 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
HDAC3O15379 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.91■□□□□ 0.62
HDAC3O15379 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.91■□□□□ 0.62
HDAC3O15379 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.91■□□□□ 0.62
HDAC3O15379 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
HDAC3O15379 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC3O15379 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 CYP2T1P-201ENST00000432607 1285 ntBASIC18.91■□□□□ 0.62
HDAC3O15379 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.91■□□□□ 0.62
HDAC3O15379 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.91■□□□□ 0.62
HDAC3O15379 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.91■□□□□ 0.62
HDAC3O15379 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.91■□□□□ 0.62
HDAC3O15379 AC008694.1-202ENST00000636953 945 ntBASIC18.91■□□□□ 0.62
HDAC3O15379 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC3O15379 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.91■□□□□ 0.62
HDAC3O15379 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms