Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM1O00151 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM1O00151 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM1O00151 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.5■□□□□ 0.55
PDLIM1O00151 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
PDLIM1O00151 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM1O00151 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.5■□□□□ 0.55
PDLIM1O00151 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM1O00151 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.49■□□□□ 0.55
PDLIM1O00151 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PDLIM1O00151 KRT16P2-201ENST00000414673 1423 ntBASIC18.49■□□□□ 0.55
PDLIM1O00151 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PDLIM1O00151 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.49■□□□□ 0.55
PDLIM1O00151 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PDLIM1O00151 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 NOC2LP2-201ENST00000407594 1944 ntBASIC18.49■□□□□ 0.55
PDLIM1O00151 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.49■□□□□ 0.55
PDLIM1O00151 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.49■□□□□ 0.55
PDLIM1O00151 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.49■□□□□ 0.55
PDLIM1O00151 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
PDLIM1O00151 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PDLIM1O00151 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 CROCCP3-202ENST00000420820 1947 ntBASIC18.49■□□□□ 0.55
PDLIM1O00151 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM1O00151 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PDLIM1O00151 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.48■□□□□ 0.55
PDLIM1O00151 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.48■□□□□ 0.55
PDLIM1O00151 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.48■□□□□ 0.55
PDLIM1O00151 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 AC011767.1-201ENST00000617410 1153 ntBASIC18.48■□□□□ 0.55
PDLIM1O00151 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PDLIM1O00151 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.48■□□□□ 0.55
PDLIM1O00151 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM1O00151 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.47■□□□□ 0.55
PDLIM1O00151 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM1O00151 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
PDLIM1O00151 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
PDLIM1O00151 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
PDLIM1O00151 RAP2CP1-201ENST00000605103 478 ntBASIC18.47■□□□□ 0.55
PDLIM1O00151 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.47■□□□□ 0.55
PDLIM1O00151 AC080038.1-201ENST00000611274 1154 ntBASIC18.47■□□□□ 0.55
PDLIM1O00151 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM1O00151 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PDLIM1O00151 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PDLIM1O00151 AC009237.14-201ENST00000609975 1594 ntBASIC18.47■□□□□ 0.55
PDLIM1O00151 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM1O00151 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM1O00151 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM1O00151 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM1O00151 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PDLIM1O00151 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.46■□□□□ 0.55
PDLIM1O00151 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.46■□□□□ 0.55
PDLIM1O00151 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM1O00151 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM1O00151 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.46■□□□□ 0.55
PDLIM1O00151 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.46■□□□□ 0.55
PDLIM1O00151 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.46■□□□□ 0.55
PDLIM1O00151 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.46■□□□□ 0.55
PDLIM1O00151 AC120498.10-201ENST00000621827 505 ntBASIC18.46■□□□□ 0.55
PDLIM1O00151 AC009113.1-201ENST00000570267 2443 ntBASIC18.46■□□□□ 0.55
PDLIM1O00151 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms