Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CHKB-CPT1BH3BT56 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 AC009086.3-201ENST00000623486 1008 ntBASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 LINC01126-201ENST00000623515 1646 ntBASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PLK5-205ENST00000642079 1969 ntBASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC10.83□□□□□ -0.68
CHKB-CPT1BH3BT56 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 USP39-204ENST00000409766 2033 ntTSL 2 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 AC044849.2-201ENST00000606596 710 ntBASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 USF2-207ENST00000595068 1612 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 AC027702.1-201ENST00000563810 1770 ntBASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 KCP-203ENST00000610776 5108 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 AC084018.2-201ENST00000613093 2607 ntBASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CHKB-CPT1BH3BT56 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms