Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AF230666.2-201ENST00000602328 725 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC095038.2-201ENST00000621464 1070 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC090617.9-201ENST00000623751 147 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP41Q3LFD5 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC026523.2-201ENST00000625039 7739 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP41Q3LFD5 RNA5SP191-201ENST00000362585 102 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 RNU6-398P-201ENST00000384143 109 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 SNORA70.10-201ENST00000384515 134 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 RN7SKP100-201ENST00000411258 284 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC092570.3-201ENST00000420113 693 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 MTCYBP21-201ENST00000443300 1113 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC069277.2-201ENST00000454211 432 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 NPM1P29-201ENST00000483112 803 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 MYL12BP2-201ENST00000503948 512 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC092709.1-201ENST00000521355 1045 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC012339.2-201ENST00000523996 453 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AP003102.1-201ENST00000525638 661 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 UBTFL9-201ENST00000534504 1148 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 OR5AN2P-201ENST00000534535 896 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP41Q3LFD5 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 NDUFB4P11-201ENST00000560510 395 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AP005262.1-201ENST00000582646 997 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC019131.2-201ENST00000609071 870 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AL391834.1-201ENST00000609609 560 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 AP000240.1-201ENST00000609910 452 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AP000346.3-201ENST00000622821 210 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 AL359715.4-201ENST00000606629 1436 ntBASIC5.3□□□□□ -1.56
USP41Q3LFD5 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP41Q3LFD5 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
USP41Q3LFD5 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 ECM1P2-201ENST00000503354 1577 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AL359643.1-201ENST00000404109 423 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 AC119751.6-201ENST00000416712 186 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 MTND2P9-201ENST00000422293 931 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 MTND4LP13-201ENST00000425022 298 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 RPL23AP23-201ENST00000452590 471 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 AURKAPS2-201ENST00000454983 333 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 SEPT7P3-201ENST00000455017 621 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 HMGB1P4-201ENST00000455362 567 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 NDUFA12P1-201ENST00000455914 406 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 NPM1P17-201ENST00000479221 602 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 AC011005.3-201ENST00000491624 395 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 CAB39P1-201ENST00000502277 460 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP41Q3LFD5 BTG4P1-201ENST00000510421 183 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 C1GALT1P2-201ENST00000510813 1104 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 RNU6-334P-201ENST00000517072 102 ntBASIC5.29□□□□□ -1.56
USP41Q3LFD5 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC5.29□□□□□ -1.56
USP41Q3LFD5 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms