Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RPL23AP43-201ENST00000446445 471 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXF1Q12946 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 RPS27AP17-201ENST00000463344 455 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 RPL21P126-201ENST00000470049 478 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 RN7SL738P-201ENST00000470264 297 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 AC021146.3-201ENST00000511911 260 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 TCP11X3P-202ENST00000514289 1254 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 RN7SKP92-201ENST00000517266 244 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 AC084783.1-201ENST00000565846 910 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC027455.1-201ENST00000574104 594 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXF1Q12946 AP005119.2-201ENST00000579735 1105 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC020915.5-201ENST00000596836 964 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 BPIFA4P-203ENST00000603168 689 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC091905.2-201ENST00000623143 306 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 AC016542.2-201ENST00000624201 619 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 RAD17P1-201ENST00000418130 2042 ntBASIC4.07□□□□□ -1.76
FOXF1Q12946 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
FOXF1Q12946 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXF1Q12946 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXF1Q12946 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 OR56B2P-202ENST00000641377 2453 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AC006971.1-201ENST00000407916 4486 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXF1Q12946 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.06□□□□□ -1.76
FOXF1Q12946 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXF1Q12946 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXF1Q12946 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXF1Q12946 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXF1Q12946 IL6STP1-201ENST00000346911 1020 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
FOXF1Q12946 SNRPFP1-201ENST00000414761 252 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 CENPIP1-201ENST00000425713 902 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 NPM1P26-201ENST00000426339 738 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 RPL23AP1-201ENST00000428990 471 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 RPL23AP25-201ENST00000430973 463 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 NDUFA5P1-201ENST00000433858 341 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AC012671.1-201ENST00000451912 203 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 MTND2P28-201ENST00000457540 1044 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 ATP5G1P3-201ENST00000463301 410 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AK3P4-201ENST00000504283 583 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 RNA5SP228-201ENST00000516232 133 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AC115286.1-201ENST00000604298 434 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 AL121890.2-201ENST00000617644 465 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AP005019.3-201ENST00000620418 560 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 AC006065.6-201ENST00000625201 545 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 LINC01109-201ENST00000603837 3081 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 TTC39DP-201ENST00000416781 1688 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
FOXF1Q12946 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXF1Q12946 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.06□□□□□ -1.76
FOXF1Q12946 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXF1Q12946 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXF1Q12946 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXF1Q12946 RPS24P12-201ENST00000402084 394 ntBASIC4.05□□□□□ -1.76
FOXF1Q12946 RPS4XP9-201ENST00000405151 780 ntBASIC4.05□□□□□ -1.76
FOXF1Q12946 AC004690.1-201ENST00000418216 328 ntBASIC4.05□□□□□ -1.76
FOXF1Q12946 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXF1Q12946 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXF1Q12946 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXF1Q12946 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms