Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HNRNPDLP3-201ENST00000456745 380 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 RNU7-182P-201ENST00000459009 62 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 RNU7-180P-201ENST00000459240 63 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC7.66□□□□□ -1.18
COL9A1P20849 EEF1A1P25-201ENST00000495704 1267 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC7.66□□□□□ -1.18
COL9A1P20849 AC018797.1-201ENST00000510791 255 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 RNU6-138P-201ENST00000515952 107 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 IGLVVII-41-1-201ENST00000518405 151 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 AC016152.1-201ENST00000548344 521 ntTSL 3 BASIC7.66□□□□□ -1.18
COL9A1P20849 AL118558.2-201ENST00000556294 238 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC7.66□□□□□ -1.18
COL9A1P20849 AC090751.1-201ENST00000566966 267 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC7.66□□□□□ -1.18
COL9A1P20849 MIR548AI-201ENST00000579940 88 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 GLUD1P4-201ENST00000590914 418 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 AC016629.2-201ENST00000597341 199 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 AL008729.2-201ENST00000606393 473 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 MIR6768-201ENST00000610734 72 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 PISRT1.1-201ENST00000616930 107 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 MIAT_exon1.1-201ENST00000617016 135 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.66□□□□□ -1.18
COL9A1P20849 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.66□□□□□ -1.18
COL9A1P20849 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC7.66□□□□□ -1.18
COL9A1P20849 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
COL9A1P20849 AC020904.2-202ENST00000614660 1401 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 LINC00954-202ENST00000449086 2995 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 KLHL8-208ENST00000512111 3245 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL9A1P20849 NELL1-201ENST00000298925 3329 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
COL9A1P20849 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 ESR1-206ENST00000427531 5436 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC7.66□□□□□ -1.18
COL9A1P20849 AC110998.1-201ENST00000519029 2053 ntBASIC7.66□□□□□ -1.18
COL9A1P20849 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC7.66□□□□□ -1.18
COL9A1P20849 WBP2NL-201ENST00000328823 2255 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 GALR1-201ENST00000299727 10044 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL9A1P20849 MAPK10-285ENST00000641207 2746 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 AC003973.3-201ENST00000624863 2822 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 C9orf72-206ENST00000619707 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 OPALIN-205ENST00000536387 3392 ntTSL 3 BASIC7.65□□□□□ -1.18
COL9A1P20849 AC022400.3-201ENST00000399449 3810 ntTSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 NLRP3-206ENST00000391828 3853 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 GPI-202ENST00000415930 4000 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 BDNF-201ENST00000314915 4340 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 SLC26A9-201ENST00000340781 4510 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 GIP-201ENST00000357424 716 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 Y_RNA.60-201ENST00000362831 98 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 Y_RNA.428-201ENST00000384078 102 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 MIR555-201ENST00000384987 96 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
COL9A1P20849 RNU6-823P-201ENST00000391042 103 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 SNORA75.6-201ENST00000391318 127 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 AL512329.1-201ENST00000404600 1592 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 MTCO1P7-201ENST00000419523 1542 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 HNRNPA3P4-201ENST00000427514 803 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 PSMA6P3-201ENST00000428242 164 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 RPL21P91-201ENST00000429231 479 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 AC097359.1-201ENST00000447946 463 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 RN7SL160P-201ENST00000468558 284 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 PABPC1P3-201ENST00000469174 459 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 RPS23P1-201ENST00000491662 432 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 SLC25A15P5-201ENST00000508033 253 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 SNORD116.3-201ENST00000517176 78 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 AC090136.1-201ENST00000520009 240 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 MEG8-218ENST00000556720 456 ntTSL 3 BASIC7.65□□□□□ -1.18
COL9A1P20849 RPL21P12-201ENST00000559810 515 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC7.65□□□□□ -1.18
COL9A1P20849 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 MIR3614-201ENST00000581261 86 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 ZNF45-204ENST00000589703 2409 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC7.65□□□□□ -1.18
COL9A1P20849 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.65□□□□□ -1.18
COL9A1P20849 MIR6128-201ENST00000615528 109 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
COL9A1P20849 AL355974.1-201ENST00000618896 1708 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms