Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 RPL7P22-201ENST00000466005 733 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 UOX-201ENST00000471089 899 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 DUBR-205ENST00000495228 411 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 OR5BK1P-201ENST00000550421 823 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 NPM1P42-201ENST00000560329 862 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC244034.2-201ENST00000562504 509 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 MIR378C-201ENST00000578683 81 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 MIR3157-201ENST00000578688 85 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 RN7SL667P-201ENST00000582817 298 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 MIR3171-201ENST00000584270 74 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AC010525.2-201ENST00000590920 195 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AL049780.3-201ENST00000624612 1583 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AP003119.3-201ENST00000566747 4192 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 MKI67P1-201ENST00000604297 1460 ntBASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC7.48□□□□□ -1.21
LIMD1Q9UGP4 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AL355974.1-201ENST00000618896 1708 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RBPJP7-201ENST00000442803 1447 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RBPJP5-201ENST00000449433 1447 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 WNK1-220ENST00000574564 1401 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 Y_RNA.202-201ENST00000364083 110 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RN7SKP191-201ENST00000364713 306 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 SNORA75.4-201ENST00000391278 119 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RNA5SP155-201ENST00000411154 129 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 SRIP2-201ENST00000428470 166 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC022022.1-201ENST00000430304 178 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AL035551.1-201ENST00000446931 348 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RN7SL83P-201ENST00000468131 297 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RPS3AP50-201ENST00000487064 803 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC010587.1-201ENST00000505809 469 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 NPM1P41-201ENST00000512920 831 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 RN7SKP2-201ENST00000517003 319 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 BTF3P12-201ENST00000519620 469 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 IGHVIII-26-1-201ENST00000520387 250 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC107953.1-201ENST00000522216 297 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 OR4R1P-201ENST00000529879 463 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC008638.3-201ENST00000603341 463 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AL121809.2-201ENST00000613169 341 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 C2orf27A-204ENST00000623058 969 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 AC105074.1-201ENST00000623380 3095 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 VPS35P1-201ENST00000563400 1518 ntBASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIMD1Q9UGP4 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 MTND4P35-201ENST00000604257 1375 ntBASIC7.46□□□□□ -1.21
LIMD1Q9UGP4 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms