Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 SNORA70.17-201ENST00000516449 133 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC022832.1-201ENST00000530718 645 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC090022.1-201ENST00000546569 311 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 HNRNPCP4-201ENST00000571636 900 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 MIR4716-201ENST00000579628 84 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 SNORA74C-1-201ENST00000580726 201 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 RN7SL753P-201ENST00000581238 290 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC007423.1-201ENST00000605009 627 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AL133406.3-201ENST00000606817 541 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AL353662.3-201ENST00000625131 237 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS39Q96JC1 MAPK10-349ENST00000641767 3661 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC008758.3-201ENST00000507003 1829 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 AC074029.4-201ENST00000624796 1859 ntBASIC4.88□□□□□ -1.63
VPS39Q96JC1 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS39Q96JC1 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS39Q96JC1 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS39Q96JC1 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 OR52B1P-201ENST00000316506 909 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 RNA5SP498-201ENST00000411342 120 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AL355433.1-201ENST00000422804 300 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC073069.1-201ENST00000428657 441 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AL137845.2-201ENST00000444292 988 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC239809.1-201ENST00000450470 217 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 OTX2P1-201ENST00000450956 354 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC112206.1-201ENST00000468416 477 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 RPS18P6-201ENST00000476880 458 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 RN7SL97P-201ENST00000486780 299 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 HIGD1AP14-201ENST00000507617 282 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC092490.3-201ENST00000545370 572 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC009268.1-201ENST00000561352 1203 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 MIR1269B-201ENST00000580405 75 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AP004372.1-201ENST00000604842 844 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 AL355480.1-201ENST00000629041 99 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS39Q96JC1 DHX9P1-201ENST00000436565 3076 ntBASIC4.87□□□□□ -1.63
VPS39Q96JC1 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
VPS39Q96JC1 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AL672167.1-205ENST00000641112 3080 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 RNA5SP455-201ENST00000365190 119 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AL592291.1-201ENST00000403830 352 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 TBCAP2-201ENST00000416175 326 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AF186996.5-201ENST00000418098 904 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 NPM1P24-201ENST00000428039 894 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 TPTE2P1-204ENST00000435256 593 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 MAPRE1P3-201ENST00000435438 796 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC092447.2-201ENST00000435487 669 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 CNOT7P2-201ENST00000441051 832 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 RPS26P39-201ENST00000469206 341 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 RN7SL319P-201ENST00000480656 221 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC116562.1-201ENST00000485355 781 ntBASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS39Q96JC1 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms