Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC008013.2-202ENST00000637965 364 ntBASIC7.37□□□□□ -1.23
CUX1P39880 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC7.36□□□□□ -1.23
CUX1P39880 AL136164.3-201ENST00000624429 3978 ntBASIC7.36□□□□□ -1.23
CUX1P39880 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC7.36□□□□□ -1.23
CUX1P39880 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC7.36□□□□□ -1.23
CUX1P39880 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 RNA5SP36-201ENST00000410197 133 ntBASIC7.36□□□□□ -1.23
CUX1P39880 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC7.36□□□□□ -1.23
CUX1P39880 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC7.36□□□□□ -1.23
CUX1P39880 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC7.36□□□□□ -1.23
CUX1P39880 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 RNA5SP246-201ENST00000458909 119 ntBASIC7.36□□□□□ -1.23
CUX1P39880 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC7.36□□□□□ -1.23
CUX1P39880 CCNG2P1-201ENST00000549521 1000 ntBASIC7.36□□□□□ -1.23
CUX1P39880 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC7.36□□□□□ -1.23
CUX1P39880 AC010201.1-201ENST00000605051 540 ntBASIC7.36□□□□□ -1.23
CUX1P39880 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC7.36□□□□□ -1.23
CUX1P39880 RLIMP1-201ENST00000339626 1680 ntBASIC7.36□□□□□ -1.23
CUX1P39880 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CUX1P39880 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC7.35□□□□□ -1.23
CUX1P39880 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CUX1P39880 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CUX1P39880 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
CUX1P39880 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CUX1P39880 AL355852.1-201ENST00000454081 1771 ntBASIC7.35□□□□□ -1.23
CUX1P39880 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.23
CUX1P39880 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC7.35□□□□□ -1.23
CUX1P39880 RN7SKP202-201ENST00000410439 330 ntBASIC7.35□□□□□ -1.23
CUX1P39880 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC7.35□□□□□ -1.23
CUX1P39880 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC7.35□□□□□ -1.23
CUX1P39880 OR5BC1P-201ENST00000529327 739 ntBASIC7.35□□□□□ -1.23
CUX1P39880 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC7.35□□□□□ -1.23
CUX1P39880 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC7.35□□□□□ -1.23
CUX1P39880 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC7.35□□□□□ -1.23
CUX1P39880 AP003400.2-201ENST00000624036 666 ntBASIC7.35□□□□□ -1.23
CUX1P39880 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CUX1P39880 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
CUX1P39880 AC093297.3-201ENST00000607056 2517 ntBASIC7.35□□□□□ -1.23
CUX1P39880 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
CUX1P39880 AL603750.1-201ENST00000624216 1717 ntBASIC7.34□□□□□ -1.23
CUX1P39880 RNA5SP513-201ENST00000364648 118 ntBASIC7.34□□□□□ -1.23
CUX1P39880 MT-RNR1-201ENST00000389680 954 ntBASIC7.34□□□□□ -1.23
CUX1P39880 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 RPL21P91-201ENST00000429231 479 ntBASIC7.34□□□□□ -1.23
CUX1P39880 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC7.34□□□□□ -1.23
CUX1P39880 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC7.34□□□□□ -1.23
CUX1P39880 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC7.34□□□□□ -1.23
CUX1P39880 DYNLL1P4-201ENST00000549314 266 ntBASIC7.34□□□□□ -1.23
CUX1P39880 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC7.34□□□□□ -1.23
CUX1P39880 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC7.34□□□□□ -1.23
CUX1P39880 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC7.34□□□□□ -1.23
CUX1P39880 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC7.34□□□□□ -1.23
CUX1P39880 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CUX1P39880 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC7.34□□□□□ -1.23
CUX1P39880 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
CUX1P39880 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
CUX1P39880 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
CUX1P39880 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC7.33□□□□□ -1.24
CUX1P39880 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC7.33□□□□□ -1.24
CUX1P39880 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
CUX1P39880 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CUX1P39880 AL035696.2-201ENST00000407941 709 ntBASIC7.33□□□□□ -1.24
CUX1P39880 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC7.33□□□□□ -1.24
CUX1P39880 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CUX1P39880 RPS20P4-201ENST00000461659 355 ntBASIC7.33□□□□□ -1.24
CUX1P39880 ALG13-211ENST00000473389 693 ntTSL 2 BASIC7.33□□□□□ -1.24
CUX1P39880 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC7.33□□□□□ -1.24
CUX1P39880 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC7.33□□□□□ -1.24
CUX1P39880 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC7.33□□□□□ -1.24
CUX1P39880 AP002360.3-201ENST00000607673 710 ntBASIC7.33□□□□□ -1.24
CUX1P39880 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CUX1P39880 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
CUX1P39880 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC7.33□□□□□ -1.24
CUX1P39880 TTC41P-205ENST00000551270 3963 ntBASIC7.33□□□□□ -1.24
CUX1P39880 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
CUX1P39880 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CUX1P39880 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
CUX1P39880 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CUX1P39880 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
CUX1P39880 TPT1P2-201ENST00000413105 503 ntBASIC7.32□□□□□ -1.24
CUX1P39880 RPL6P5-201ENST00000445678 828 ntBASIC7.32□□□□□ -1.24
CUX1P39880 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC7.32□□□□□ -1.24
CUX1P39880 RNA5SP360-201ENST00000516555 118 ntBASIC7.32□□□□□ -1.24
CUX1P39880 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC7.32□□□□□ -1.24
CUX1P39880 NPM1P5-201ENST00000557228 838 ntBASIC7.32□□□□□ -1.24
CUX1P39880 AC112484.5-201ENST00000624189 228 ntBASIC7.32□□□□□ -1.24
CUX1P39880 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CUX1P39880 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms