Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNA5SP360-201ENST00000516555 118 ntBASIC4.48□□□□□ -1.69
COL6A3P12111 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A3P12111 MIR4769-201ENST00000584126 77 ntBASIC4.48□□□□□ -1.69
COL6A3P12111 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A3P12111 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A3P12111 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.48□□□□□ -1.69
COL6A3P12111 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A3P12111 UG0898H09-202ENST00000623646 7040 ntBASIC4.48□□□□□ -1.69
COL6A3P12111 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
COL6A3P12111 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
COL6A3P12111 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 RNU11-4P-201ENST00000391149 133 ntBASIC4.48□□□□□ -1.69
COL6A3P12111 OOSP1P1-201ENST00000423265 274 ntBASIC4.48□□□□□ -1.69
COL6A3P12111 ZYG11AP1-201ENST00000430329 837 ntBASIC4.48□□□□□ -1.69
COL6A3P12111 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A3P12111 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
COL6A3P12111 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A3P12111 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
COL6A3P12111 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A3P12111 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.48□□□□□ -1.69
COL6A3P12111 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A3P12111 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.47□□□□□ -1.69
COL6A3P12111 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC005300.1-201ENST00000428401 373 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 RPS3AP14-201ENST00000483907 780 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC006504.3-201ENST00000586818 523 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC012493.2-201ENST00000595083 291 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC107068.1-201ENST00000563286 4218 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 LPP-208ENST00000448637 5835 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 NAIP-208ENST00000517649 6124 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.47□□□□□ -1.69
COL6A3P12111 VN1R37P-201ENST00000419096 748 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 BTF3P6-201ENST00000448054 499 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.47□□□□□ -1.69
COL6A3P12111 SCARNA14-201ENST00000516903 136 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A3P12111 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AL596275.2-208ENST00000641192 594 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 AL365361.1-201ENST00000566942 3481 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A3P12111 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A3P12111 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
COL6A3P12111 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AJ239321.1-201ENST00000424255 564 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 AC090018.1-201ENST00000434369 367 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 Vault.1-201ENST00000516474 102 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A3P12111 PCA3_2.1-201ENST00000612507 409 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.47□□□□□ -1.69
COL6A3P12111 AL133243.3-201ENST00000617415 3004 ntBASIC4.47□□□□□ -1.69
COL6A3P12111 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL6A3P12111 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL6A3P12111 ZFRP1-201ENST00000457579 2970 ntBASIC4.46□□□□□ -1.7
COL6A3P12111 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A3P12111 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.46□□□□□ -1.7
COL6A3P12111 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.46□□□□□ -1.7
COL6A3P12111 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A3P12111 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.46□□□□□ -1.7
COL6A3P12111 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 PEX12P1-201ENST00000400284 1048 ntBASIC4.46□□□□□ -1.7
COL6A3P12111 AL512326.1-201ENST00000443050 721 ntBASIC4.46□□□□□ -1.7
COL6A3P12111 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.46□□□□□ -1.7
COL6A3P12111 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.46□□□□□ -1.7
COL6A3P12111 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.46□□□□□ -1.7
COL6A3P12111 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms