Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RPS27AP16-201ENST00000492222 470 ntBASIC5.46□□□□□ -1.54
SCN4AP35499 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.46□□□□□ -1.54
SCN4AP35499 MORF4L2P1-201ENST00000503761 858 ntBASIC5.46□□□□□ -1.54
SCN4AP35499 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.46□□□□□ -1.54
SCN4AP35499 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.46□□□□□ -1.54
SCN4AP35499 AC068993.1-201ENST00000546724 589 ntBASIC5.46□□□□□ -1.54
SCN4AP35499 CCNG2P1-201ENST00000549521 1000 ntBASIC5.46□□□□□ -1.54
SCN4AP35499 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.46□□□□□ -1.54
SCN4AP35499 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
SCN4AP35499 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SCN4AP35499 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SCN4AP35499 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.45□□□□□ -1.54
SCN4AP35499 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 RNA5SP241-201ENST00000391326 114 ntBASIC5.45□□□□□ -1.54
SCN4AP35499 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 AC008958.1-201ENST00000511047 682 ntBASIC5.45□□□□□ -1.54
SCN4AP35499 OR5BC1P-201ENST00000529327 739 ntBASIC5.45□□□□□ -1.54
SCN4AP35499 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.45□□□□□ -1.54
SCN4AP35499 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.45□□□□□ -1.54
SCN4AP35499 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.45□□□□□ -1.54
SCN4AP35499 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.45□□□□□ -1.54
SCN4AP35499 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.45□□□□□ -1.54
SCN4AP35499 AC113403.1-201ENST00000604910 193 ntBASIC5.45□□□□□ -1.54
SCN4AP35499 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.45□□□□□ -1.54
SCN4AP35499 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.45□□□□□ -1.54
SCN4AP35499 AC073136.1-201ENST00000449426 2884 ntBASIC5.45□□□□□ -1.54
SCN4AP35499 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SCN4AP35499 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
SCN4AP35499 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.44□□□□□ -1.54
SCN4AP35499 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.44□□□□□ -1.54
SCN4AP35499 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.44□□□□□ -1.54
SCN4AP35499 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 AL035696.2-201ENST00000407941 709 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 RN7SKP16-201ENST00000410180 299 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 RN7SKP33-201ENST00000410942 340 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.44□□□□□ -1.54
SCN4AP35499 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.44□□□□□ -1.54
SCN4AP35499 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.44□□□□□ -1.54
SCN4AP35499 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.44□□□□□ -1.54
SCN4AP35499 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.44□□□□□ -1.54
SCN4AP35499 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.44□□□□□ -1.54
SCN4AP35499 HNRNPCP4-201ENST00000571636 900 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
SCN4AP35499 AC027228.2-201ENST00000567141 2154 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.44□□□□□ -1.54
SCN4AP35499 SCARNA13-201ENST00000516672 275 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.44□□□□□ -1.54
SCN4AP35499 AC127024.5-201ENST00000580085 462 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 MIR3944-201ENST00000581277 108 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 AC073137.1-201ENST00000605636 634 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 uc_338.13-201ENST00000618243 179 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 AC006065.6-201ENST00000625201 545 ntBASIC5.44□□□□□ -1.54
SCN4AP35499 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SCN4AP35499 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SCN4AP35499 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.43□□□□□ -1.54
SCN4AP35499 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.43□□□□□ -1.54
SCN4AP35499 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.43□□□□□ -1.54
SCN4AP35499 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.43□□□□□ -1.54
SCN4AP35499 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 Y_RNA.333-201ENST00000365274 102 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 AL161909.1-201ENST00000397390 712 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.43□□□□□ -1.54
SCN4AP35499 AC092162.1-201ENST00000432828 434 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 ARAFP2-201ENST00000440565 559 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.43□□□□□ -1.54
SCN4AP35499 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.43□□□□□ -1.54
SCN4AP35499 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.43□□□□□ -1.54
SCN4AP35499 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.43□□□□□ -1.54
SCN4AP35499 OR5D2P-201ENST00000524390 911 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms