Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC092653.1-201ENST00000608509 531 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 AL136097.3-201ENST00000611097 505 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 AL158063.1-201ENST00000615349 536 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 AL445670.1-201ENST00000618889 801 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 AC124312.6-202ENST00000623624 418 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 RBPJP7-201ENST00000442803 1447 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 RBPJP5-201ENST00000449433 1447 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 GNL2P1-201ENST00000451274 2190 ntBASIC5.99□□□□□ -1.45
TRIM39Q9HCM9 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RNU5D-1-201ENST00000363299 116 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 Y_RNA.505-201ENST00000384489 102 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RNU11-201ENST00000387069 134 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RNU6-648P-201ENST00000410190 107 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RNU2-42P-201ENST00000410697 113 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL031779.1-201ENST00000415663 330 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 PCBP2P1-201ENST00000437262 977 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 TXNP5-201ENST00000441043 315 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 PCNPP2-201ENST00000441651 455 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL445466.1-201ENST00000448432 357 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RPL12P26-201ENST00000452430 487 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RPL23AP40-201ENST00000487630 390 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 ATP1B1P1-201ENST00000509767 915 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RNA5SP340-201ENST00000517132 107 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 NANOGNBP2-201ENST00000544753 553 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC119403.2-201ENST00000590960 598 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL360012.1-201ENST00000602813 131 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL390237.1-201ENST00000404226 1415 ntBASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRIM39Q9HCM9 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 AC016583.1-201ENST00000624221 2431 ntBASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 Y_RNA.194-201ENST00000363985 102 ntBASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 RN7SKP240-201ENST00000410583 375 ntBASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 IFNNP1-201ENST00000429219 553 ntBASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 MTND2P40-201ENST00000436718 841 ntBASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.97□□□□□ -1.45
TRIM39Q9HCM9 RPS27AP15-201ENST00000447672 466 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms