Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC7.45□□□□□ -1.22
CUX1P39880 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
CUX1P39880 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC7.45□□□□□ -1.22
CUX1P39880 AL157831.1-201ENST00000426134 473 ntBASIC7.45□□□□□ -1.22
CUX1P39880 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 FTH1P21-201ENST00000512179 511 ntBASIC7.45□□□□□ -1.22
CUX1P39880 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC7.45□□□□□ -1.22
CUX1P39880 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 BCORP1-203ENST00000513194 5093 ntBASIC7.45□□□□□ -1.22
CUX1P39880 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CUX1P39880 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
CUX1P39880 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC7.44□□□□□ -1.22
CUX1P39880 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC7.44□□□□□ -1.22
CUX1P39880 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC7.44□□□□□ -1.22
CUX1P39880 RNA5SP151-201ENST00000365632 117 ntBASIC7.44□□□□□ -1.22
CUX1P39880 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC7.44□□□□□ -1.22
CUX1P39880 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC7.44□□□□□ -1.22
CUX1P39880 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
CUX1P39880 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC7.44□□□□□ -1.22
CUX1P39880 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC7.44□□□□□ -1.22
CUX1P39880 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CUX1P39880 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC7.43□□□□□ -1.22
CUX1P39880 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC7.43□□□□□ -1.22
CUX1P39880 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC7.43□□□□□ -1.22
CUX1P39880 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC7.43□□□□□ -1.22
CUX1P39880 RPS27AP17-201ENST00000463344 455 ntBASIC7.43□□□□□ -1.22
CUX1P39880 RN7SL132P-201ENST00000478131 296 ntBASIC7.43□□□□□ -1.22
CUX1P39880 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC7.43□□□□□ -1.22
CUX1P39880 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC7.43□□□□□ -1.22
CUX1P39880 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC7.43□□□□□ -1.22
CUX1P39880 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC7.43□□□□□ -1.22
CUX1P39880 AC130352.1-201ENST00000602979 661 ntBASIC7.43□□□□□ -1.22
CUX1P39880 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC7.43□□□□□ -1.22
CUX1P39880 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC7.43□□□□□ -1.22
CUX1P39880 AL356863.1-201ENST00000623378 1080 ntBASIC7.43□□□□□ -1.22
CUX1P39880 AC139769.1-204ENST00000472297 1931 ntBASIC7.43□□□□□ -1.22
CUX1P39880 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC7.43□□□□□ -1.22
CUX1P39880 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC7.43□□□□□ -1.22
CUX1P39880 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC7.43□□□□□ -1.22
CUX1P39880 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CUX1P39880 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 MIR554-201ENST00000384874 96 ntBASIC7.42□□□□□ -1.22
CUX1P39880 RN7SKP235-201ENST00000410662 305 ntBASIC7.42□□□□□ -1.22
CUX1P39880 RPS3AP25-201ENST00000411660 793 ntBASIC7.42□□□□□ -1.22
CUX1P39880 AL590806.1-201ENST00000415818 853 ntBASIC7.42□□□□□ -1.22
CUX1P39880 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC7.42□□□□□ -1.22
CUX1P39880 AL358232.1-201ENST00000448030 501 ntBASIC7.42□□□□□ -1.22
CUX1P39880 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC7.42□□□□□ -1.22
CUX1P39880 AC090686.1-201ENST00000481577 749 ntBASIC7.42□□□□□ -1.22
CUX1P39880 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC7.42□□□□□ -1.22
CUX1P39880 RNA5SP519-201ENST00000516480 119 ntBASIC7.42□□□□□ -1.22
CUX1P39880 AC023632.4-201ENST00000517783 191 ntBASIC7.42□□□□□ -1.22
CUX1P39880 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC7.42□□□□□ -1.22
CUX1P39880 MIR4286-201ENST00000580651 93 ntBASIC7.42□□□□□ -1.22
CUX1P39880 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 MIR7151-201ENST00000617477 60 ntBASIC7.42□□□□□ -1.22
CUX1P39880 TEX41-256ENST00000626411 368 ntTSL 5 BASIC7.42□□□□□ -1.22
CUX1P39880 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
CUX1P39880 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 MAPK10-372ENST00000641954 3413 ntBASIC7.42□□□□□ -1.22
CUX1P39880 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 CASC19-206ENST00000641028 1430 ntBASIC7.42□□□□□ -1.22
CUX1P39880 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CUX1P39880 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CUX1P39880 RNU6-628P-201ENST00000410675 107 ntBASIC7.42□□□□□ -1.22
CUX1P39880 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC7.42□□□□□ -1.22
CUX1P39880 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC7.42□□□□□ -1.22
CUX1P39880 ARAFP1-201ENST00000422172 605 ntBASIC7.42□□□□□ -1.22
CUX1P39880 RPS29P7-201ENST00000439662 171 ntBASIC7.42□□□□□ -1.22
CUX1P39880 RPL5P32-201ENST00000454085 879 ntBASIC7.42□□□□□ -1.22
CUX1P39880 AC012442.3-202ENST00000636742 206 ntBASIC7.42□□□□□ -1.22
CUX1P39880 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CUX1P39880 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CUX1P39880 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
CUX1P39880 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC7.41□□□□□ -1.22
CUX1P39880 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms