Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LSM1O15116 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LSM1O15116 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LSM1O15116 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.68□□□□□ -1.66
LSM1O15116 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
LSM1O15116 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 AC092435.4-201ENST00000623012 4159 ntBASIC4.67□□□□□ -1.66
LSM1O15116 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 USP9YP4-201ENST00000424401 1745 ntBASIC4.67□□□□□ -1.66
LSM1O15116 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.67□□□□□ -1.66
LSM1O15116 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LSM1O15116 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LSM1O15116 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.67□□□□□ -1.66
LSM1O15116 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.67□□□□□ -1.66
LSM1O15116 AF186996.5-201ENST00000418098 904 ntBASIC4.67□□□□□ -1.66
LSM1O15116 VN1R37P-201ENST00000419096 748 ntBASIC4.67□□□□□ -1.66
LSM1O15116 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 AC004938.1-201ENST00000438468 308 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AL163193.1-201ENST00000444895 788 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.67□□□□□ -1.66
LSM1O15116 OTX2P1-201ENST00000450956 354 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AL606490.1-201ENST00000452266 765 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AC005008.1-201ENST00000456151 612 ntBASIC4.67□□□□□ -1.66
LSM1O15116 RN7SL172P-201ENST00000460535 303 ntBASIC4.67□□□□□ -1.66
LSM1O15116 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 AC117394.1-201ENST00000477323 567 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AC090142.2-201ENST00000483263 416 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AL133372.1-201ENST00000493565 745 ntBASIC4.67□□□□□ -1.66
LSM1O15116 RN7SL101P-201ENST00000496350 279 ntBASIC4.67□□□□□ -1.66
LSM1O15116 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.67□□□□□ -1.66
LSM1O15116 ATP5LP3-201ENST00000514223 304 ntBASIC4.67□□□□□ -1.66
LSM1O15116 RNU6-709P-201ENST00000517257 104 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.67□□□□□ -1.66
LSM1O15116 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.67□□□□□ -1.66
LSM1O15116 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.67□□□□□ -1.66
LSM1O15116 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 SNORA74C-1-201ENST00000580726 201 ntBASIC4.67□□□□□ -1.66
LSM1O15116 MIR4691-201ENST00000583764 85 ntBASIC4.67□□□□□ -1.66
LSM1O15116 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 AC010424.2-201ENST00000607594 443 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AC015813.4-201ENST00000610469 179 ntBASIC4.67□□□□□ -1.66
LSM1O15116 AL022401.1-201ENST00000619498 108 ntBASIC4.67□□□□□ -1.66
LSM1O15116 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 AL133412.1-201ENST00000380194 2992 ntBASIC4.67□□□□□ -1.66
LSM1O15116 PABPC1P6-201ENST00000445594 1829 ntBASIC4.67□□□□□ -1.66
LSM1O15116 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.67□□□□□ -1.66
LSM1O15116 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.67□□□□□ -1.66
LSM1O15116 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LSM1O15116 AP000542.2-201ENST00000623199 6179 ntBASIC4.66□□□□□ -1.66
LSM1O15116 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.66□□□□□ -1.66
LSM1O15116 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.66□□□□□ -1.66
LSM1O15116 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 ZNF733P-202ENST00000444809 1573 ntBASIC4.66□□□□□ -1.66
LSM1O15116 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 AC017104.4-201ENST00000636283 1592 ntBASIC4.66□□□□□ -1.66
LSM1O15116 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 AC107068.1-201ENST00000563286 4218 ntBASIC4.66□□□□□ -1.66
LSM1O15116 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 AC110792.3-201ENST00000595906 1614 ntBASIC4.66□□□□□ -1.66
LSM1O15116 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 RNU1-83P-201ENST00000363426 164 ntBASIC4.66□□□□□ -1.66
LSM1O15116 RNA5SP428-201ENST00000365129 132 ntBASIC4.66□□□□□ -1.66
LSM1O15116 RNA5SP455-201ENST00000365190 119 ntBASIC4.66□□□□□ -1.66
LSM1O15116 BMS1P13-201ENST00000417301 885 ntBASIC4.66□□□□□ -1.66
LSM1O15116 AC093084.1-201ENST00000424233 687 ntBASIC4.66□□□□□ -1.66
LSM1O15116 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 AL137845.2-201ENST00000444292 988 ntBASIC4.66□□□□□ -1.66
LSM1O15116 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.66□□□□□ -1.66
LSM1O15116 AC090114.3-201ENST00000479267 829 ntBASIC4.66□□□□□ -1.66
LSM1O15116 AC079841.1-201ENST00000481228 950 ntBASIC4.66□□□□□ -1.66
LSM1O15116 AC116562.1-201ENST00000485355 781 ntBASIC4.66□□□□□ -1.66
LSM1O15116 RN7SL558P-201ENST00000497468 299 ntBASIC4.66□□□□□ -1.66
LSM1O15116 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LSM1O15116 IGLVIV-64-201ENST00000518581 301 ntBASIC4.66□□□□□ -1.66
LSM1O15116 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.66□□□□□ -1.66
LSM1O15116 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC4.66□□□□□ -1.66
LSM1O15116 AL049839.1-201ENST00000556151 657 ntBASIC4.66□□□□□ -1.66
LSM1O15116 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.66□□□□□ -1.66
LSM1O15116 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC4.66□□□□□ -1.66
LSM1O15116 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.66□□□□□ -1.66
LSM1O15116 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.66□□□□□ -1.66
LSM1O15116 AC011445.2-201ENST00000599274 173 ntBASIC4.66□□□□□ -1.66
LSM1O15116 GMCL1P2-201ENST00000605230 823 ntBASIC4.66□□□□□ -1.66
LSM1O15116 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.66□□□□□ -1.66
LSM1O15116 AC015804.1-201ENST00000622935 435 ntBASIC4.66□□□□□ -1.66
LSM1O15116 AL353662.3-201ENST00000625131 237 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms