Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 IRF5P1-201ENST00000504852 2164 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 RNU4-44P-201ENST00000363050 141 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 MIR421-201ENST00000365696 85 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AL356057.1-202ENST00000402263 756 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AL021331.1-201ENST00000402817 582 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 RPL21P67-201ENST00000402896 478 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 OR51A6P-201ENST00000418680 1004 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 OR2AM1P-201ENST00000422137 422 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 NPM1P26-201ENST00000426339 738 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC012512.1-201ENST00000446594 718 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 HIGD1AP8-201ENST00000453927 274 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 ENPP7P11-201ENST00000505915 627 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC008033.2-201ENST00000542626 177 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AL512310.9-201ENST00000553311 948 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 ABI1P1-201ENST00000603375 1120 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AL163051.2-201ENST00000618976 735 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 AL049777.1-201ENST00000622740 518 ntBASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SNX9Q9Y5X1 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 Z95331.1-201ENST00000623075 23112 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC104297.1-201ENST00000393779 870 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 LRRC37BP1-201ENST00000398851 714 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 TRIM60P17-201ENST00000415181 719 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 ARAFP1-201ENST00000422172 605 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AL450023.3-201ENST00000440592 271 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 RPL7AP61-201ENST00000443410 636 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC112498.1-201ENST00000444401 332 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AL691482.1-201ENST00000453255 87 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 RPL7AP10-201ENST00000481016 791 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC016550.1-201ENST00000505348 785 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC108157.1-201ENST00000510511 539 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 C1GALT1P2-201ENST00000510813 1104 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 BTF3P13-201ENST00000513224 490 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 RNU6-415P-201ENST00000516252 97 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC040958.1-201ENST00000561102 201 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 RPAP2P1-201ENST00000603626 1168 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC120053.1-201ENST00000607706 736 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 TMEM30CP-203ENST00000637814 1035 ntBASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SNX9Q9Y5X1 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.34□□□□□ -1.56
SNX9Q9Y5X1 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.34□□□□□ -1.56
SNX9Q9Y5X1 AC110792.3-201ENST00000595906 1614 ntBASIC5.34□□□□□ -1.56
SNX9Q9Y5X1 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SNX9Q9Y5X1 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SNX9Q9Y5X1 HSPA8P19-201ENST00000505359 1517 ntBASIC5.33□□□□□ -1.56
SNX9Q9Y5X1 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms