Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-709P-201ENST00000517257 104 ntBASIC6.48□□□□□ -1.37
MSH6P52701 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.48□□□□□ -1.37
MSH6P52701 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.48□□□□□ -1.37
MSH6P52701 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSH6P52701 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC6.48□□□□□ -1.37
MSH6P52701 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC6.48□□□□□ -1.37
MSH6P52701 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.48□□□□□ -1.37
MSH6P52701 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC6.48□□□□□ -1.37
MSH6P52701 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.48□□□□□ -1.37
MSH6P52701 AL627171.1-201ENST00000618845 1308 ntBASIC6.48□□□□□ -1.37
MSH6P52701 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSH6P52701 MAPK10-328ENST00000641553 4009 ntBASIC6.48□□□□□ -1.37
MSH6P52701 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSH6P52701 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSH6P52701 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSH6P52701 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.47□□□□□ -1.37
MSH6P52701 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 MIR372-201ENST00000362225 67 ntBASIC6.47□□□□□ -1.37
MSH6P52701 RNU6-525P-201ENST00000363685 104 ntBASIC6.47□□□□□ -1.37
MSH6P52701 SNORA11.2-201ENST00000408318 127 ntBASIC6.47□□□□□ -1.37
MSH6P52701 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.47□□□□□ -1.37
MSH6P52701 YY1P1-201ENST00000427625 668 ntBASIC6.47□□□□□ -1.37
MSH6P52701 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.47□□□□□ -1.37
MSH6P52701 AC108475.1-201ENST00000507880 950 ntBASIC6.47□□□□□ -1.37
MSH6P52701 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.47□□□□□ -1.37
MSH6P52701 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 AC116553.2-201ENST00000564203 463 ntBASIC6.47□□□□□ -1.37
MSH6P52701 AC073137.1-201ENST00000605636 634 ntBASIC6.47□□□□□ -1.37
MSH6P52701 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC6.47□□□□□ -1.37
MSH6P52701 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 FTO-203ENST00000460382 1517 ntTSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC6.47□□□□□ -1.37
MSH6P52701 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSH6P52701 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSH6P52701 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSH6P52701 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSH6P52701 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
MSH6P52701 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.37
MSH6P52701 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.37
MSH6P52701 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
MSH6P52701 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC6.46□□□□□ -1.37
MSH6P52701 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC6.46□□□□□ -1.37
MSH6P52701 RN7SL517P-201ENST00000462240 305 ntBASIC6.46□□□□□ -1.37
MSH6P52701 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC6.46□□□□□ -1.37
MSH6P52701 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC6.46□□□□□ -1.37
MSH6P52701 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.46□□□□□ -1.37
MSH6P52701 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.37
MSH6P52701 AC093249.4-201ENST00000564755 259 ntBASIC6.46□□□□□ -1.37
MSH6P52701 AC090286.3-201ENST00000573133 187 ntBASIC6.46□□□□□ -1.37
MSH6P52701 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC6.46□□□□□ -1.37
MSH6P52701 AC027216.1-201ENST00000577726 685 ntBASIC6.46□□□□□ -1.37
MSH6P52701 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC6.46□□□□□ -1.37
MSH6P52701 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC6.46□□□□□ -1.37
MSH6P52701 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC6.46□□□□□ -1.37
MSH6P52701 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.46□□□□□ -1.37
MSH6P52701 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
MSH6P52701 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
MSH6P52701 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
MSH6P52701 AC004817.4-201ENST00000602396 3625 ntBASIC6.45□□□□□ -1.38
MSH6P52701 SNORA71.3-201ENST00000362582 128 ntBASIC6.45□□□□□ -1.38
MSH6P52701 Y_RNA.333-201ENST00000365274 102 ntBASIC6.45□□□□□ -1.38
MSH6P52701 RNA5SP283-201ENST00000365604 119 ntBASIC6.45□□□□□ -1.38
MSH6P52701 TRAV35-201ENST00000390462 330 ntBASIC6.45□□□□□ -1.38
MSH6P52701 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
MSH6P52701 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.45□□□□□ -1.38
MSH6P52701 AC079804.1-201ENST00000461922 436 ntBASIC6.45□□□□□ -1.38
MSH6P52701 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.45□□□□□ -1.38
MSH6P52701 AL132838.2-201ENST00000492041 314 ntBASIC6.45□□□□□ -1.38
MSH6P52701 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC6.45□□□□□ -1.38
MSH6P52701 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.45□□□□□ -1.38
MSH6P52701 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC6.45□□□□□ -1.38
MSH6P52701 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC6.45□□□□□ -1.38
MSH6P52701 MIR3944-201ENST00000581277 108 ntBASIC6.45□□□□□ -1.38
MSH6P52701 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.45□□□□□ -1.38
MSH6P52701 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
MSH6P52701 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSH6P52701 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.45□□□□□ -1.38
MSH6P52701 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms