Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC106900.2-201ENST00000604994 317 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AC105429.2-201ENST00000610567 517 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 MIR7109-201ENST00000613748 65 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 uc_338.9-201ENST00000617424 182 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 U1.31-201ENST00000620022 160 ntBASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIMD1Q9UGP4 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 C7orf31-202ENST00000409280 3357 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC096921.2-201ENST00000561507 1916 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 OR5J1P-201ENST00000313544 939 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC005294.1-201ENST00000355509 281 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP55-201ENST00000364888 307 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RNU6-225P-201ENST00000384613 103 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RNU6-952P-201ENST00000391164 108 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MTND3P8-201ENST00000412909 339 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 NAP1L1P2-201ENST00000414182 1089 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 TPMTP2-201ENST00000414372 726 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC007394.1-201ENST00000421941 531 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AL627308.1-201ENST00000435693 821 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RPL12P11-201ENST00000439970 501 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 BNIP3P2-201ENST00000441221 577 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC006480.1-201ENST00000449887 378 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RN7SL325P-201ENST00000460434 283 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 UBA52P3-201ENST00000491303 382 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RN7SL775P-201ENST00000498361 336 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 IGBP1P4-201ENST00000503202 879 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 B4GALNT2P1-201ENST00000508857 307 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP70-201ENST00000516655 271 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AP005597.4-201ENST00000526762 229 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC040162.2-201ENST00000573092 157 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC010591.1-201ENST00000603941 649 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC115621.1-201ENST00000604653 858 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 OR10AB1P-201ENST00000609613 938 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC010205.1-201ENST00000616668 449 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MIR6823-201ENST00000622118 61 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC140479.4-205ENST00000636339 820 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 ATM-228ENST00000639240 498 ntTSL 5 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 CASC19-212ENST00000641153 1287 ntBASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIMD1Q9UGP4 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
LIMD1Q9UGP4 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
LIMD1Q9UGP4 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
LIMD1Q9UGP4 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.2
LIMD1Q9UGP4 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
LIMD1Q9UGP4 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
LIMD1Q9UGP4 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIMD1Q9UGP4 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIMD1Q9UGP4 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIMD1Q9UGP4 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIMD1Q9UGP4 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIMD1Q9UGP4 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC7.52□□□□□ -1.21
LIMD1Q9UGP4 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 207.3 ms