RNA–Protein interactions for RNA: ENST00000602955.1

AC004542.1-201, humanhuman

TSL 3 BASIC

Gene AC004542.1, Length 264 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004542.1-201ENST00000602955 CHIC1Q5VXU3 224 aa15.99■□□□□ 0.15
AC004542.1-201ENST00000602955 AEBP2Q6ZN18 517 aaPredicted RBP15.79■□□□□ 0.12
AC004542.1-201ENST00000602955 PHF23Q9BUL5 403 aaPredicted RBP14.12□□□□□ -0.15
AC004542.1-201ENST00000602955 SENP3Q9H4L4 574 aaPredicted RBP13.33□□□□□ -0.28
AC004542.1-201ENST00000602955 PLPPR3Q6T4P5 718 aa13.22□□□□□ -0.29
AC004542.1-201ENST00000602955 ADRA2BP18089 450 aa12.36□□□□□ -0.43
AC004542.1-201ENST00000602955 FOXD1Q16676 465 aa12.28□□□□□ -0.44
AC004542.1-201ENST00000602955 PPP6R1Q9UPN7 881 aa12.25□□□□□ -0.45
AC004542.1-201ENST00000602955 KCNA4P22459 653 aa12.08□□□□□ -0.48
AC004542.1-201ENST00000602955 EHMT2Q96KQ7 1210 aa11.88□□□□□ -0.51
AC004542.1-201ENST00000602955 PPP4R3CPQ6ZMV5 832 aa11.71□□□□□ -0.53
AC004542.1-201ENST00000602955 PIAS4Q8N2W9 510 aaPredicted RBP11.71□□□□□ -0.53
AC004542.1-201ENST00000602955 SLC4A1APQ9BWU0 796 aaKnown RBP11.61□□□□□ -0.55
AC004542.1-201ENST00000602955 NCBP3Q53F19 620 aaKnown RBP11.58□□□□□ -0.56
AC004542.1-201ENST00000602955 CSRNP3Q8WYN3 585 aa11.53□□□□□ -0.56
AC004542.1-201ENST00000602955 NPM3O75607 178 aaKnown RBP11.4□□□□□ -0.58
AC004542.1-201ENST00000602955 CNKSR2Q8WXI2 1034 aa11.27□□□□□ -0.61
AC004542.1-201ENST00000602955 SCAF1Q9H7N4 1312 aaKnown RBP11.24□□□□□ -0.61
AC004542.1-201ENST00000602955 ZBTB22O15209 634 aa11.14□□□□□ -0.63
AC004542.1-201ENST00000602955 MSH5O43196 834 aa11.11□□□□□ -0.63
AC004542.1-201ENST00000602955 DNAJC5BQ9UF47 199 aa11.08□□□□□ -0.64
AC004542.1-201ENST00000602955 FOXD4L1Q9NU39 408 aa10.96□□□□□ -0.65
AC004542.1-201ENST00000602955 MAPK8IP2Q13387 824 aaPredicted RBP10.95□□□□□ -0.66
AC004542.1-201ENST00000602955 RNF216Q9NWF9 866 aaPredicted RBP10.91□□□□□ -0.66
AC004542.1-201ENST00000602955 HOXD11P31277 338 aaPredicted RBP10.73□□□□□ -0.69
AC004542.1-201ENST00000602955 DMRT2Q9Y5R5 561 aa10.73□□□□□ -0.69
AC004542.1-201ENST00000602955 SLC4A2P04920 1241 aa10.65□□□□□ -0.7
AC004542.1-201ENST00000602955 ATXN8OSP0DMR3 200 aa10.57□□□□□ -0.72
AC004542.1-201ENST00000602955 MYCNP04198 464 aaPredicted RBP10.53□□□□□ -0.72
AC004542.1-201ENST00000602955 AMER1Q5JTC6 1135 aaPredicted RBP10.46□□□□□ -0.73
AC004542.1-201ENST00000602955 RTN4Q9NQC3 1192 aaKnown RBP10.45□□□□□ -0.74
AC004542.1-201ENST00000602955 FKBP8Q14318 412 aa10.36□□□□□ -0.75
AC004542.1-201ENST00000602955 SLC24A1O60721 1099 aa10.35□□□□□ -0.75
AC004542.1-201ENST00000602955 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.19□□□□□ -0.78
AC004542.1-201ENST00000602955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.18□□□□□ -0.78
AC004542.1-201ENST00000602955 HNRNPUL2Q1KMD3 747 aaKnown RBP10.18□□□□□ -0.78
AC004542.1-201ENST00000602955 SAMD1Q6SPF0 538 aaPredicted RBP10.18□□□□□ -0.78
AC004542.1-201ENST00000602955 ATF5Q9Y2D1 282 aaPredicted RBP10.18□□□□□ -0.78
AC004542.1-201ENST00000602955 DCAF8L1A6NGE4 600 aa10.16□□□□□ -0.78
AC004542.1-201ENST00000602955 U3KPZ7 1027 aaPredicted RBP10.12□□□□□ -0.79
AC004542.1-201ENST00000602955 ZNF219Q9P2Y4 722 aaPredicted RBP9.98□□□□□ -0.81
AC004542.1-201ENST00000602955 APLP2Q06481 763 aa9.94□□□□□ -0.82
AC004542.1-201ENST00000602955 FBXO3Q9UK99 471 aa9.87□□□□□ -0.83
AC004542.1-201ENST00000602955 SPDYE4A6NLX3 237 aa9.83□□□□□ -0.84
AC004542.1-201ENST00000602955 MKRN4PQ13434 485 aaPredicted RBP9.8□□□□□ -0.84
AC004542.1-201ENST00000602955 PROM2Q8N271 834 aa9.8□□□□□ -0.84
AC004542.1-201ENST00000602955 FBLN2P98095 1184 aa9.73□□□□□ -0.85
AC004542.1-201ENST00000602955 VASPP50552 380 aaPredicted RBP9.72□□□□□ -0.85
AC004542.1-201ENST00000602955 TRHP20396 242 aaPredicted RBP9.64□□□□□ -0.87
AC004542.1-201ENST00000602955 PLCB2Q00722 1185 aa9.64□□□□□ -0.87
AC004542.1-201ENST00000602955 POLA2Q14181 598 aa9.64□□□□□ -0.87
AC004542.1-201ENST00000602955 SPINK5Q9NQ38 1064 aaPredicted RBP9.64□□□□□ -0.87
AC004542.1-201ENST00000602955 IFNLR1Q8IU57 520 aaPredicted RBP9.62□□□□□ -0.87
AC004542.1-201ENST00000602955 RNF39Q9H2S5 420 aa9.59□□□□□ -0.87
AC004542.1-201ENST00000602955 CAPN15O75808 1086 aa9.56□□□□□ -0.88
AC004542.1-201ENST00000602955 ZBTB12Q9Y330 459 aaPredicted RBP9.56□□□□□ -0.88
AC004542.1-201ENST00000602955 PKD2Q13563 968 aa9.53□□□□□ -0.88
AC004542.1-201ENST00000602955 C1QBPQ07021 282 aaKnown RBP9.5□□□□□ -0.89
AC004542.1-201ENST00000602955 DCAF8L2P0C7V8 631 aa9.47□□□□□ -0.89
AC004542.1-201ENST00000602955 HAP1P54257 671 aaPredicted RBP9.45□□□□□ -0.9
AC004542.1-201ENST00000602955 POTEDQ86YR6 584 aa9.45□□□□□ -0.9
AC004542.1-201ENST00000602955 ABCB7O75027 752 aa9.42□□□□□ -0.9
AC004542.1-201ENST00000602955 SPOCK2Q92563 424 aa9.42□□□□□ -0.9
AC004542.1-201ENST00000602955 STAG3Q9UJ98 1225 aa9.4□□□□□ -0.9
AC004542.1-201ENST00000602955 KLHL34Q8N239 644 aa9.38□□□□□ -0.91
AC004542.1-201ENST00000602955 VSIG10Q8N0Z9 540 aa9.37□□□□□ -0.91
AC004542.1-201ENST00000602955 ZNF692Q9BU19 519 aaPredicted RBP9.36□□□□□ -0.91
AC004542.1-201ENST00000602955 SPDYE2BA6NHP3 402 aa9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 ECM2O94769 699 aaPredicted RBP9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 SPDYE6P0CI01 402 aa9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 SPDYE2Q495Y8 402 aa9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 BBXQ8WY36 941 aaPredicted RBP9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 BCANQ96GW7 911 aa9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 SSUH2Q9Y2M2 353 aa9.34□□□□□ -0.91
AC004542.1-201ENST00000602955 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.32□□□□□ -0.92
AC004542.1-201ENST00000602955 DSG3P32926 999 aa9.3□□□□□ -0.92
AC004542.1-201ENST00000602955 PLCD3Q8N3E9 789 aa9.3□□□□□ -0.92
AC004542.1-201ENST00000602955 NPM1P06748 294 aaKnown RBP eCLIP9.29□□□□□ -0.92
AC004542.1-201ENST00000602955 OSCARQ8IYS5 282 aa9.29□□□□□ -0.92
AC004542.1-201ENST00000602955 PABPN1Q86U42 306 aaKnown RBP eCLIP9.26□□□□□ -0.93
AC004542.1-201ENST00000602955 MIER1Q8N108 512 aa9.25□□□□□ -0.93
AC004542.1-201ENST00000602955 RGL2O15211 777 aa9.24□□□□□ -0.93
AC004542.1-201ENST00000602955 PAXIP1Q6ZW49 1069 aaPredicted RBP9.23□□□□□ -0.93
AC004542.1-201ENST00000602955 KDM2AQ9Y2K7 1162 aa9.23□□□□□ -0.93
AC004542.1-201ENST00000602955 TAOK2Q9UL54 1235 aa9.21□□□□□ -0.94
AC004542.1-201ENST00000602955 CFAP44Q96MT7 982 aa9.18□□□□□ -0.94
AC004542.1-201ENST00000602955 ZBTB47Q9UFB7 747 aaPredicted RBP9.18□□□□□ -0.94
AC004542.1-201ENST00000602955 SPRYD3Q8NCJ5 442 aa9.17□□□□□ -0.94
AC004542.1-201ENST00000602955 PLEKHG5O94827 1062 aa9.15□□□□□ -0.94
AC004542.1-201ENST00000602955 PRKCSHP14314 528 aaPredicted RBP9.15□□□□□ -0.94
AC004542.1-201ENST00000602955 TRIM41Q8WV44 630 aa9.14□□□□□ -0.95
AC004542.1-201ENST00000602955 CIZ1Q9ULV3 898 aaPredicted RBP9.14□□□□□ -0.95
AC004542.1-201ENST00000602955 CHGAP10645 457 aaKnown RBP9.11□□□□□ -0.95
AC004542.1-201ENST00000602955 TSHZ2Q9NRE2 1034 aa9.11□□□□□ -0.95
AC004542.1-201ENST00000602955 HS6ST3Q8IZP7 471 aa9.07□□□□□ -0.96
AC004542.1-201ENST00000602955 DNAJC5Q9H3Z4 198 aa9.05□□□□□ -0.96
AC004542.1-201ENST00000602955 TPRNQ4KMQ1 711 aa9.04□□□□□ -0.96
AC004542.1-201ENST00000602955 GSE1Q14687 1217 aa9.03□□□□□ -0.96
AC004542.1-201ENST00000602955 RNF25Q96BH1 459 aaPredicted RBP9□□□□□ -0.97
AC004542.1-201ENST00000602955 NUBP1P53384 320 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms