Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.64□□□□□ -1.67
CLDN9O95484 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.64□□□□□ -1.67
CLDN9O95484 AL133268.1-201ENST00000405676 1401 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
CLDN9O95484 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CLDN9O95484 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
CLDN9O95484 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 RN7SKP95-201ENST00000362860 303 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 RNU1-83P-201ENST00000363426 164 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 UBBP2-201ENST00000376781 231 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CLDN9O95484 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.63□□□□□ -1.67
CLDN9O95484 RNU4-34P-201ENST00000410431 124 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 CHEK2P3-201ENST00000416118 248 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.63□□□□□ -1.67
CLDN9O95484 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.63□□□□□ -1.67
CLDN9O95484 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 RPL31P53-201ENST00000457065 348 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 SEPT14P1-201ENST00000458703 648 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 AC108751.2-201ENST00000469993 231 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 RPSAP50-201ENST00000481955 852 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 AK4P6-201ENST00000505168 528 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 BUD31P1-201ENST00000521828 359 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 FKBP1BP1-201ENST00000553366 325 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.63□□□□□ -1.67
CLDN9O95484 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.63□□□□□ -1.67
CLDN9O95484 AC105105.5-201ENST00000622635 1294 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 AC091905.4-201ENST00000623432 202 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 AC011815.3-201ENST00000624194 473 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.63□□□□□ -1.67
CLDN9O95484 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.63□□□□□ -1.67
CLDN9O95484 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 HSPA8P17-201ENST00000427029 1382 ntBASIC4.63□□□□□ -1.67
CLDN9O95484 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLDN9O95484 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.63□□□□□ -1.67
CLDN9O95484 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.63□□□□□ -1.67
CLDN9O95484 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 AL672167.1-205ENST00000641112 3080 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 SNORA58B-201ENST00000364259 136 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 AL080315.1-201ENST00000406055 466 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 RN7SKP213-201ENST00000410746 298 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 RN7SKP97-201ENST00000410966 333 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.62□□□□□ -1.67
CLDN9O95484 NIPA2P1-201ENST00000426223 976 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC112498.1-201ENST00000444401 332 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.62□□□□□ -1.67
CLDN9O95484 AL445433.1-201ENST00000457507 257 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 AP000942.1-201ENST00000463969 747 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC093763.2-201ENST00000505334 1223 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 GAPDHP56-201ENST00000506031 988 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 AC147055.1-201ENST00000509261 750 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC109635.6-201ENST00000525487 1113 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.62□□□□□ -1.67
CLDN9O95484 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC112694.2-201ENST00000623697 768 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.62□□□□□ -1.67
CLDN9O95484 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC126323.6-202ENST00000568092 3511 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.62□□□□□ -1.67
CLDN9O95484 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
CLDN9O95484 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.62□□□□□ -1.67
CLDN9O95484 AC073429.2-201ENST00000569694 1444 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.62□□□□□ -1.67
CLDN9O95484 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLDN9O95484 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLDN9O95484 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLDN9O95484 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLDN9O95484 AC010132.2-201ENST00000295493 1043 ntBASIC4.61□□□□□ -1.67
CLDN9O95484 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLDN9O95484 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CLDN9O95484 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.61□□□□□ -1.67
CLDN9O95484 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLDN9O95484 RNU6-386P-201ENST00000362650 107 ntBASIC4.61□□□□□ -1.67
CLDN9O95484 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLDN9O95484 ARL4AP5-201ENST00000404372 599 ntBASIC4.61□□□□□ -1.67
CLDN9O95484 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.61□□□□□ -1.67
CLDN9O95484 RPS27P18-201ENST00000431701 247 ntBASIC4.61□□□□□ -1.67
CLDN9O95484 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.61□□□□□ -1.67
CLDN9O95484 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.61□□□□□ -1.67
CLDN9O95484 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.61□□□□□ -1.67
CLDN9O95484 AC104651.2-201ENST00000447549 528 ntBASIC4.61□□□□□ -1.67
CLDN9O95484 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.61□□□□□ -1.67
CLDN9O95484 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms