Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.22□□□□□ -1.73
CHD3Q12873 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHD3Q12873 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.21□□□□□ -1.73
CHD3Q12873 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CHD3Q12873 AC139713.2-214ENST00000642059 1811 ntBASIC4.21□□□□□ -1.73
CHD3Q12873 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
CHD3Q12873 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.73
CHD3Q12873 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.21□□□□□ -1.74
CHD3Q12873 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 MIR1193-201ENST00000408109 78 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 CHEK2P3-201ENST00000416118 248 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 RPL7P57-201ENST00000423238 740 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.21□□□□□ -1.74
CHD3Q12873 AC073143.1-201ENST00000436316 395 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.21□□□□□ -1.74
CHD3Q12873 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.21□□□□□ -1.74
CHD3Q12873 OR2A3P-201ENST00000493774 953 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AC083829.1-201ENST00000503756 657 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.21□□□□□ -1.74
CHD3Q12873 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.21□□□□□ -1.74
CHD3Q12873 AP001880.2-201ENST00000538233 448 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 AC015914.2-201ENST00000618167 288 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.21□□□□□ -1.74
CHD3Q12873 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.21□□□□□ -1.74
CHD3Q12873 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHD3Q12873 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.21□□□□□ -1.74
CHD3Q12873 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CHD3Q12873 MIR134-201ENST00000385258 73 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AC234779.1-201ENST00000425910 285 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 OR2B7P-201ENST00000429302 934 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 KCTD10P1-201ENST00000434203 625 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 SLC25A18P1-201ENST00000449385 454 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 RPL10P17-201ENST00000453852 316 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 IGKV2D-10-201ENST00000520194 281 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 GLRXP2-201ENST00000555594 321 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.21□□□□□ -1.74
CHD3Q12873 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.21□□□□□ -1.74
CHD3Q12873 OR52H1-202ENST00000641796 1061 ntBASIC4.21□□□□□ -1.74
CHD3Q12873 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.21□□□□□ -1.74
CHD3Q12873 Z95327.2-201ENST00000414579 1873 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.2□□□□□ -1.74
CHD3Q12873 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 BTBD10P1-201ENST00000549824 1352 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 AC104623.2-202ENST00000623477 4002 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CHD3Q12873 SNORA66-201ENST00000384792 133 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 MIR589-201ENST00000385238 99 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.2□□□□□ -1.74
CHD3Q12873 RGS17P1-201ENST00000423358 553 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.2□□□□□ -1.74
CHD3Q12873 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.2□□□□□ -1.74
CHD3Q12873 RPL21P129-201ENST00000491732 478 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.2□□□□□ -1.74
CHD3Q12873 AC025674.1-201ENST00000507074 324 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 MRPS33P2-201ENST00000507850 322 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.2□□□□□ -1.74
CHD3Q12873 RN7SKP92-201ENST00000517266 244 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.2□□□□□ -1.74
CHD3Q12873 CYCSP40-201ENST00000575927 294 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 OR7A8P-201ENST00000595427 913 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 AC010857.1-201ENST00000606398 594 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 AL731566.1-201ENST00000620490 1937 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.2□□□□□ -1.74
CHD3Q12873 AL132640.2-201ENST00000559968 1698 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.2□□□□□ -1.74
CHD3Q12873 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CHD3Q12873 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CHD3Q12873 NCLP2-201ENST00000416078 1462 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 MTCO1P46-201ENST00000451639 1491 ntBASIC4.2□□□□□ -1.74
CHD3Q12873 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CHD3Q12873 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHD3Q12873 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHD3Q12873 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms