Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PCBP2-206ENST00000455667 2741 ntAPPRIS ALT1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 AC021054.1-201ENST00000537514 2338 ntTSL 2 BASIC7.74□□□□□ -1.17
COL9A1P20849 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 FMOD-201ENST00000354955 3310 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 ZNF670-ZNF695-202ENST00000474541 2751 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
COL9A1P20849 TLR1-202ENST00000502213 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 P2RY14-201ENST00000309170 2513 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC7.74□□□□□ -1.17
COL9A1P20849 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 RNU6-593P-201ENST00000364716 112 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 RNU6-657P-201ENST00000383904 107 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 RPSAP72-201ENST00000407020 358 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 RN7SKP108-201ENST00000411367 328 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 RPSAP60-201ENST00000415403 880 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC7.74□□□□□ -1.17
COL9A1P20849 AL137014.1-201ENST00000420490 1226 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC139712.2-201ENST00000424302 339 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 OR2AS1P-201ENST00000427827 319 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 GSTA11P-201ENST00000452866 669 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC7.74□□□□□ -1.17
COL9A1P20849 RNU6-1132P-201ENST00000459214 107 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC058823.1-201ENST00000485315 474 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 RNA5SP337-201ENST00000517007 109 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 GLYATL1P4-201ENST00000529326 906 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 OR7E96P-201ENST00000530816 976 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC084121.1-201ENST00000533882 835 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC7.74□□□□□ -1.17
COL9A1P20849 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC7.74□□□□□ -1.17
COL9A1P20849 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 AC048383.1-201ENST00000558226 527 ntTSL 4 BASIC7.74□□□□□ -1.17
COL9A1P20849 HSPE1P3-201ENST00000559254 309 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 MIR4312-201ENST00000579909 76 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 MIR4424-201ENST00000585257 86 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC7.74□□□□□ -1.17
COL9A1P20849 AL355297.3-201ENST00000604082 446 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC090525.3-201ENST00000605601 189 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AL591167.1-201ENST00000607321 456 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
COL9A1P20849 AC091903.1-201ENST00000624322 454 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AP001052.1-201ENST00000626421 99 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC011471.4-201ENST00000638271 216 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC7.74□□□□□ -1.17
COL9A1P20849 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC7.74□□□□□ -1.17
COL9A1P20849 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.74□□□□□ -1.17
COL9A1P20849 LRRC2-AS1-201ENST00000599511 2291 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 AF254983.1-201ENST00000612267 3336 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 SELENOT-202ENST00000471696 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 PCDH9-202ENST00000377865 5709 ntAPPRIS P4 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 MKI67P1-201ENST00000604297 1460 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 OSBPL9P1-201ENST00000604744 1469 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 AGR2-203ENST00000419304 1778 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 ADAM3A-202ENST00000460383 2528 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 BMX-203ENST00000357607 2598 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 CTAGE3P-201ENST00000454280 2404 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 CHODL-206ENST00000400135 2136 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 DLG1-208ENST00000419354 3994 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 AC016027.2-201ENST00000441167 2493 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 NR3C2-207ENST00000511528 2967 ntTSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 ZNF146-202ENST00000456324 3780 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 NF1P2-201ENST00000556855 2505 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 AC105342.1-201ENST00000378334 6848 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AP003486.1-201ENST00000525716 3994 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 DEFB124-201ENST00000317676 216 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 RNU6-746P-201ENST00000384112 109 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 Y_RNA.512-201ENST00000384518 102 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 RNA5SP431-201ENST00000410312 120 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 RNU6-101P-201ENST00000410323 104 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 RNA5SP345-201ENST00000410646 108 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 RNU6-272P-201ENST00000411028 104 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC7.73□□□□□ -1.17
COL9A1P20849 TPMTP2-201ENST00000414372 726 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 RPS15AP12-201ENST00000419498 388 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 AC083862.1-201ENST00000427378 1242 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 RPL23AP19-201ENST00000436229 369 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 DBIL5P2-201ENST00000443827 253 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AC073909.1-201ENST00000447112 999 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 MTND1P17-201ENST00000448961 204 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AP1S2P1-201ENST00000457344 379 ntBASIC7.73□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms