Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 SOCS5P3-201ENST00000425115 1576 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC133552.1-201ENST00000569988 4007 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 MUC2-202ENST00000613187 4845 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC068870.3-201ENST00000625077 2536 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC007382.1-201ENST00000624376 2618 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 SNORD65-201ENST00000391079 73 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 BX510359.2-201ENST00000417920 305 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 TMBIM7P-201ENST00000418074 855 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 OR5M12P-201ENST00000423388 929 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 USP9YP9-201ENST00000429406 715 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 MTCO1P57-201ENST00000432182 261 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC005154.2-201ENST00000438110 379 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC104629.2-201ENST00000468627 598 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 SOX5P1-201ENST00000524155 1127 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC002069.2-201ENST00000603580 883 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 HMGB1P51-201ENST00000605166 638 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AL135786.2-201ENST00000608422 615 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC015914.2-201ENST00000618167 288 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC073429.2-201ENST00000569694 1444 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC097063.1-201ENST00000426714 1797 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 HSPA8P14-201ENST00000552265 1805 ntBASIC4.85□□□□□ -1.63
LHX3Q9UBR4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LHX3Q9UBR4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AL442639.1-201ENST00000625030 1899 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 RLIMP2-201ENST00000427891 1563 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 MTCO1P15-201ENST00000529569 1526 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC053481.2-202ENST00000582394 1500 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC010928.1-201ENST00000592477 1447 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 DDX18P5-201ENST00000534547 1306 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 RNVU1-6-201ENST00000364688 164 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 MIR585-201ENST00000384887 94 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 RNU1-82P-201ENST00000390851 165 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 PEX12P1-201ENST00000400284 1048 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 ST13P16-201ENST00000401760 781 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 OR51B3P-201ENST00000412287 913 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 VN1R37P-201ENST00000419096 748 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 FABP7P1-201ENST00000424004 391 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC093084.1-201ENST00000424233 687 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 MTND4LP13-201ENST00000425022 298 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AL772161.1-201ENST00000439130 476 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC090686.1-201ENST00000481577 749 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 MIR6853-201ENST00000619642 74 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 AC074140.1-201ENST00000621617 208 ntBASIC4.84□□□□□ -1.63
LHX3Q9UBR4 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LHX3Q9UBR4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
LHX3Q9UBR4 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms