Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC063976.2-201ENST00000425667 3556 ntBASIC5.03□□□□□ -1.6
MSH3P20585 AC097461.1-201ENST00000568928 2821 ntBASIC5.03□□□□□ -1.6
MSH3P20585 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.03□□□□□ -1.6
MSH3P20585 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSH3P20585 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
MSH3P20585 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
MSH3P20585 MTCO1P15-201ENST00000529569 1526 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH3P20585 AL136520.1-201ENST00000600311 1322 ntBASIC5.02□□□□□ -1.61
MSH3P20585 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.02□□□□□ -1.61
MSH3P20585 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH3P20585 AC100778.3-201ENST00000580060 1750 ntBASIC5.02□□□□□ -1.61
MSH3P20585 HSPA8P18-201ENST00000439846 1928 ntBASIC5.02□□□□□ -1.61
MSH3P20585 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSH3P20585 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.02□□□□□ -1.61
MSH3P20585 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH3P20585 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 NPM1P22-201ENST00000427761 952 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH3P20585 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 AC092647.3-201ENST00000443044 633 ntBASIC5.02□□□□□ -1.61
MSH3P20585 CEACAMP7-201ENST00000444105 496 ntBASIC5.02□□□□□ -1.61
MSH3P20585 KNOP1P3-201ENST00000446933 426 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AL354714.3-201ENST00000447284 493 ntBASIC5.02□□□□□ -1.61
MSH3P20585 RAB28P3-201ENST00000448325 597 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AC073850.1-201ENST00000449243 255 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH3P20585 RNU6-319P-201ENST00000516025 108 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH3P20585 IGLVIV-66-1-201ENST00000521832 460 ntBASIC5.02□□□□□ -1.61
MSH3P20585 OR4V1P-201ENST00000525394 1140 ntBASIC5.02□□□□□ -1.61
MSH3P20585 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.02□□□□□ -1.61
MSH3P20585 NMNAT1P1-201ENST00000554095 876 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 AC092868.3-201ENST00000560515 784 ntBASIC5.02□□□□□ -1.61
MSH3P20585 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 AP005262.1-201ENST00000582646 997 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AL450270.1-201ENST00000606160 391 ntBASIC5.02□□□□□ -1.61
MSH3P20585 AC016769.4-201ENST00000616893 535 ntBASIC5.02□□□□□ -1.61
MSH3P20585 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.02□□□□□ -1.61
MSH3P20585 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.02□□□□□ -1.61
MSH3P20585 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSH3P20585 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH3P20585 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.02□□□□□ -1.61
MSH3P20585 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH3P20585 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH3P20585 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH3P20585 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSH3P20585 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
MSH3P20585 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH3P20585 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSH3P20585 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
MSH3P20585 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
MSH3P20585 MIR105-2-201ENST00000385083 81 ntBASIC5.01□□□□□ -1.61
MSH3P20585 ST13P16-201ENST00000401760 781 ntBASIC5.01□□□□□ -1.61
MSH3P20585 PTGES3P2-201ENST00000407942 482 ntBASIC5.01□□□□□ -1.61
MSH3P20585 RN7SKP278-201ENST00000410504 342 ntBASIC5.01□□□□□ -1.61
MSH3P20585 DPPA2P3-201ENST00000411853 655 ntBASIC5.01□□□□□ -1.61
MSH3P20585 RPL23AP27-201ENST00000415161 451 ntBASIC5.01□□□□□ -1.61
MSH3P20585 MTND2P15-201ENST00000418575 892 ntBASIC5.01□□□□□ -1.61
MSH3P20585 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.01□□□□□ -1.61
MSH3P20585 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.01□□□□□ -1.61
MSH3P20585 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 RPL35AP21-201ENST00000437667 333 ntBASIC5.01□□□□□ -1.61
MSH3P20585 XKRY2-201ENST00000442362 1093 ntBASIC5.01□□□□□ -1.61
MSH3P20585 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 MRPL35P2-201ENST00000448009 511 ntBASIC5.01□□□□□ -1.61
MSH3P20585 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 AP002345.1-201ENST00000456493 928 ntBASIC5.01□□□□□ -1.61
MSH3P20585 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 AC090543.1-201ENST00000492168 485 ntBASIC5.01□□□□□ -1.61
MSH3P20585 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.01□□□□□ -1.61
MSH3P20585 CAB39P1-201ENST00000502277 460 ntBASIC5.01□□□□□ -1.61
MSH3P20585 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 RN7SKP147-201ENST00000517154 244 ntBASIC5.01□□□□□ -1.61
MSH3P20585 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 AC105031.1-201ENST00000518550 476 ntBASIC5.01□□□□□ -1.61
MSH3P20585 AC013701.1-201ENST00000522657 465 ntBASIC5.01□□□□□ -1.61
MSH3P20585 OR7E128P-201ENST00000532736 1024 ntBASIC5.01□□□□□ -1.61
MSH3P20585 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.01□□□□□ -1.61
MSH3P20585 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.01□□□□□ -1.61
MSH3P20585 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
MSH3P20585 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms