Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 AL133243.3-201ENST00000617415 3004 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.78□□□□□ -1.64
SHOX2O60902 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SHOX2O60902 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 AC067945.1-201ENST00000342609 618 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 RNA5SP284-201ENST00000384547 118 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHOX2O60902 RNA5SP339-201ENST00000390987 122 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 ATP5F1P2-201ENST00000398143 760 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 AL357515.1-201ENST00000402967 542 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 RNA5SP345-201ENST00000410646 108 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AC234781.4-201ENST00000419384 244 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.78□□□□□ -1.64
SHOX2O60902 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.78□□□□□ -1.64
SHOX2O60902 AL354714.3-201ENST00000447284 493 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 TCEA1P1-201ENST00000449716 880 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.78□□□□□ -1.64
SHOX2O60902 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SHOX2O60902 AC090142.2-201ENST00000483263 416 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC4.78□□□□□ -1.64
SHOX2O60902 HNRNPKP5-201ENST00000515300 253 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 RNU6-941P-201ENST00000516346 108 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.78□□□□□ -1.64
SHOX2O60902 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC4.78□□□□□ -1.64
SHOX2O60902 AC090281.1-201ENST00000523019 276 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.78□□□□□ -1.64
SHOX2O60902 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.78□□□□□ -1.64
SHOX2O60902 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.78□□□□□ -1.64
SHOX2O60902 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.78□□□□□ -1.64
SHOX2O60902 FO393422.1-201ENST00000603908 708 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AL031666.3-201ENST00000609320 1006 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AC126175.1-201ENST00000617041 758 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.78□□□□□ -1.64
SHOX2O60902 CYP4F35P-202ENST00000636121 390 ntBASIC4.78□□□□□ -1.64
SHOX2O60902 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.78□□□□□ -1.64
SHOX2O60902 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.78□□□□□ -1.64
SHOX2O60902 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHOX2O60902 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.77□□□□□ -1.65
SHOX2O60902 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.77□□□□□ -1.65
SHOX2O60902 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SHOX2O60902 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHOX2O60902 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SHOX2O60902 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
SHOX2O60902 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.77□□□□□ -1.65
SHOX2O60902 MIR585-201ENST00000384887 94 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 U3.25-201ENST00000391209 220 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.77□□□□□ -1.65
SHOX2O60902 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC4.77□□□□□ -1.65
SHOX2O60902 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.77□□□□□ -1.65
SHOX2O60902 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHOX2O60902 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.77□□□□□ -1.65
SHOX2O60902 CYCSP6-201ENST00000434498 302 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 IGHV5-78-201ENST00000450948 295 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AC133473.1-201ENST00000455173 299 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 RPS26P15-201ENST00000488067 348 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AC010350.1-201ENST00000504908 231 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.77□□□□□ -1.65
SHOX2O60902 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SHOX2O60902 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHOX2O60902 CYP4A43P-201ENST00000568156 121 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.77□□□□□ -1.65
SHOX2O60902 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.77□□□□□ -1.65
SHOX2O60902 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.77□□□□□ -1.65
SHOX2O60902 AC010245.2-201ENST00000606908 1167 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AL731566.2-201ENST00000618971 317 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SHOX2O60902 AC105105.5-201ENST00000622635 1294 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 AL049767.1-202ENST00000637826 242 ntBASIC4.77□□□□□ -1.65
SHOX2O60902 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.77□□□□□ -1.65
SHOX2O60902 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
SHOX2O60902 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHOX2O60902 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SHOX2O60902 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SHOX2O60902 AL356489.2-201ENST00000566968 3528 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 AL355852.1-201ENST00000454081 1771 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHOX2O60902 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHOX2O60902 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.76□□□□□ -1.65
SHOX2O60902 AL672167.2-201ENST00000377164 879 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.76□□□□□ -1.65
SHOX2O60902 RNU1-149P-201ENST00000390870 161 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SHOX2O60902 AL021331.1-201ENST00000402817 582 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 UBTFL3-201ENST00000418934 1024 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.76□□□□□ -1.65
SHOX2O60902 AL121776.1-201ENST00000429337 372 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 HMGB3P9-201ENST00000441799 583 ntBASIC4.76□□□□□ -1.65
SHOX2O60902 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.76□□□□□ -1.65
SHOX2O60902 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms