Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC097381.3-201ENST00000608962 462 ntBASIC7.54□□□□□ -1.2
HLA-CQ95604 AC130324.3-201ENST00000614165 542 ntBASIC7.54□□□□□ -1.2
HLA-CQ95604 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.54□□□□□ -1.2
HLA-CQ95604 AC011471.4-201ENST00000638271 216 ntBASIC7.54□□□□□ -1.2
HLA-CQ95604 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 GABRP-203ENST00000518525 3576 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
HLA-CQ95604 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
HLA-CQ95604 XIST-206ENST00000434839 2865 ntTSL 5 BASIC7.54□□□□□ -1.2
HLA-CQ95604 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.54□□□□□ -1.2
HLA-CQ95604 FBXO38-203ENST00000394370 4132 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 GP2-201ENST00000302555 3406 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 CD46-209ENST00000367047 3089 ntTSL 5 BASIC7.54□□□□□ -1.2
HLA-CQ95604 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
HLA-CQ95604 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC7.54□□□□□ -1.2
HLA-CQ95604 ACTR6-201ENST00000188312 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 GC-208ENST00000513476 1567 ntTSL 5 BASIC7.54□□□□□ -1.2
HLA-CQ95604 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 CD180-201ENST00000256447 5388 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-CQ95604 AC005538.2-201ENST00000623215 1864 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 MAPK10-319ENST00000641459 2542 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 Z97832.2-201ENST00000605896 4261 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AC020904.2-202ENST00000614660 1401 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
HLA-CQ95604 SCMH1-210ENST00000402904 3204 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC7.53□□□□□ -1.2
HLA-CQ95604 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
HLA-CQ95604 RNU5E-1-201ENST00000362477 120 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 Y_RNA.197-201ENST00000364004 102 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 RNA5SP433-201ENST00000364491 114 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 RNA5SP85-201ENST00000365378 119 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 MUC1-209ENST00000368396 516 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 SNORD116-29-201ENST00000384516 83 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 RNY4P36-201ENST00000391116 96 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 Y_RNA.605-201ENST00000410577 105 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 HSPE1P1-201ENST00000421494 318 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC7.53□□□□□ -1.2
HLA-CQ95604 GPR143P-201ENST00000434155 205 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC7.53□□□□□ -1.2
HLA-CQ95604 TCEA1P1-201ENST00000449716 880 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 Y_RNA.635-201ENST00000459041 101 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 RPL7P22-201ENST00000466005 733 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 IGKV2D-38-201ENST00000518423 240 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 IGLVIV-64-201ENST00000518581 301 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 RNU6-988P-201ENST00000519081 107 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC7.53□□□□□ -1.2
HLA-CQ95604 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC7.53□□□□□ -1.2
HLA-CQ95604 PSMA2P1-201ENST00000526365 646 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 OR5BN1P-201ENST00000532955 829 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC7.53□□□□□ -1.2
HLA-CQ95604 SNRPGP18-201ENST00000553000 214 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 OR1E3-201ENST00000575608 948 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC7.53□□□□□ -1.2
HLA-CQ95604 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 AC011447.2-201ENST00000592921 283 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AC084781.2-201ENST00000615568 161 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC7.53□□□□□ -1.2
HLA-CQ95604 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC7.53□□□□□ -1.2
HLA-CQ95604 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 NLRP8-202ENST00000590542 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 AL022163.1-201ENST00000430261 1569 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 AC006020.1-201ENST00000420179 1854 ntBASIC7.53□□□□□ -1.2
HLA-CQ95604 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC7.53□□□□□ -1.2
HLA-CQ95604 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC7.53□□□□□ -1.2
HLA-CQ95604 LDB2-202ENST00000441778 2476 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 LRRC4C-202ENST00000527150 3085 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
HLA-CQ95604 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.2
HLA-CQ95604 CDY7P-201ENST00000429883 1604 ntBASIC7.52□□□□□ -1.2
HLA-CQ95604 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.52□□□□□ -1.21
HLA-CQ95604 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
HLA-CQ95604 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms