Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 AL352984.2-201ENST00000611153 546 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 AP003400.5-201ENST00000624827 617 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 AC010325.3-201ENST00000641084 394 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 LYARP1-201ENST00000436977 1501 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 PARP4P1-201ENST00000435945 2337 ntBASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
PTCHD1Q96NR3 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 OLMALINC-203ENST00000641087 3779 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AP003486.1-201ENST00000525716 3994 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC016716.1-201ENST00000265882 708 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 RNU5D-1-201ENST00000363299 116 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 RNU6-259P-201ENST00000383999 107 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 VN1R20P-201ENST00000425215 966 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC005297.1-201ENST00000444765 862 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 EEF1E1P1-201ENST00000446998 430 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 RPL31P44-201ENST00000447680 377 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 RN7SL568P-201ENST00000493069 298 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 IGBP1P5-201ENST00000507524 1000 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 HMGN1P16-201ENST00000508308 283 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 RN7SKP31-201ENST00000516354 278 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 RN7SKP244-201ENST00000516513 307 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 EEF1B2P4-201ENST00000551398 348 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SERPINE4P-201ENST00000554978 281 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SNORD39.2-201ENST00000579995 76 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SS18L2P2-201ENST00000583960 235 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SLC25A36P1-201ENST00000590111 465 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 MIR6780B-201ENST00000610307 79 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 uc_338.29-201ENST00000615099 168 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC073348.1-201ENST00000623002 331 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC022140.2-201ENST00000623500 188 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AL079343.1-201ENST00000572358 1771 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AL391261.1-201ENST00000555712 1479 ntBASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTCHD1Q96NR3 MT-RNR2-201ENST00000387347 1559 ntBASIC6.01□□□□□ -1.45
PTCHD1Q96NR3 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
PTCHD1Q96NR3 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PTCHD1Q96NR3 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
PTCHD1Q96NR3 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTCHD1Q96NR3 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTCHD1Q96NR3 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms