Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.86■■□□□ 1.09
VTA1Q9NP79 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 AL353719.1-201ENST00000566847 864 ntBASIC21.86■■□□□ 1.09
VTA1Q9NP79 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
VTA1Q9NP79 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VTA1Q9NP79 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 KRT8P41-201ENST00000533985 1514 ntBASIC21.85■■□□□ 1.09
VTA1Q9NP79 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 FAM8A6P-201ENST00000407496 1135 ntBASIC21.85■■□□□ 1.09
VTA1Q9NP79 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 AC139887.4-201ENST00000607877 719 ntBASIC21.85■■□□□ 1.09
VTA1Q9NP79 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.85■■□□□ 1.09
VTA1Q9NP79 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VTA1Q9NP79 AC073314.1-201ENST00000568729 2216 ntBASIC21.84■■□□□ 1.09
VTA1Q9NP79 LINC01465-201ENST00000408887 1940 ntBASIC21.84■■□□□ 1.09
VTA1Q9NP79 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VTA1Q9NP79 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VTA1Q9NP79 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
VTA1Q9NP79 RNF152P1-201ENST00000397754 604 ntBASIC21.84■■□□□ 1.09
VTA1Q9NP79 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 CKBP1-201ENST00000565489 1086 ntBASIC21.84■■□□□ 1.09
VTA1Q9NP79 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VTA1Q9NP79 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VTA1Q9NP79 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
VTA1Q9NP79 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.83■■□□□ 1.09
VTA1Q9NP79 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VTA1Q9NP79 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VTA1Q9NP79 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
VTA1Q9NP79 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VTA1Q9NP79 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 COX11P1-201ENST00000489116 835 ntBASIC21.83■■□□□ 1.09
VTA1Q9NP79 YBX1P2-201ENST00000489612 999 ntBASIC21.83■■□□□ 1.09
VTA1Q9NP79 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 AL512604.3-201ENST00000569583 964 ntBASIC21.83■■□□□ 1.09
VTA1Q9NP79 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.83■■□□□ 1.09
VTA1Q9NP79 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VTA1Q9NP79 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.83■■□□□ 1.08
VTA1Q9NP79 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
VTA1Q9NP79 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
VTA1Q9NP79 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
VTA1Q9NP79 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VTA1Q9NP79 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VTA1Q9NP79 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 AC141257.4-201ENST00000634557 245 ntBASIC21.82■■□□□ 1.08
VTA1Q9NP79 AC136944.6-201ENST00000634818 245 ntBASIC21.82■■□□□ 1.08
VTA1Q9NP79 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VTA1Q9NP79 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.82■■□□□ 1.08
VTA1Q9NP79 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VTA1Q9NP79 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VTA1Q9NP79 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms