Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM39Q9HCM9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM39Q9HCM9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
TRIM39Q9HCM9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM39Q9HCM9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM39Q9HCM9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM39Q9HCM9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 C1QL1P1-201ENST00000568105 661 ntBASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 AF186192.3-201ENST00000583427 947 ntBASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 AL353708.3-201ENST00000610272 989 ntBASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM39Q9HCM9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 AP002982.1-201ENST00000492365 877 ntBASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 KRT8P8-201ENST00000434750 1448 ntBASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM39Q9HCM9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 AL049637.2-201ENST00000641778 930 ntBASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms