Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 AC010203.1-204ENST00000548782 407 ntBASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PAAF1Q9BRP4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 TCF3P1-201ENST00000423021 1937 ntBASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 TSPY14P-201ENST00000303979 915 ntBASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 FAM207BP-201ENST00000447172 505 ntBASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 C2orf69P3-201ENST00000565542 1120 ntBASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 AL160286.2-201ENST00000567150 934 ntBASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PAAF1Q9BRP4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.92
PAAF1Q9BRP4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 MFAP1P1-201ENST00000442257 1255 ntBASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 AL445228.2-201ENST00000605589 952 ntBASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.82■□□□□ 0.92
PAAF1Q9BRP4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 AL137013.1-201ENST00000432946 1228 ntBASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 EGLN1P1-201ENST00000531623 762 ntBASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms