Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.37■□□□□ 0.85
CDCA3Q99618 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
CDCA3Q99618 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.37■□□□□ 0.85
CDCA3Q99618 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.37■□□□□ 0.85
CDCA3Q99618 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CDCA3Q99618 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.37■□□□□ 0.85
CDCA3Q99618 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDCA3Q99618 KRT8P41-201ENST00000533985 1514 ntBASIC20.37■□□□□ 0.85
CDCA3Q99618 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CDCA3Q99618 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDCA3Q99618 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.37■□□□□ 0.85
CDCA3Q99618 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDCA3Q99618 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CDCA3Q99618 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.36■□□□□ 0.85
CDCA3Q99618 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.36■□□□□ 0.85
CDCA3Q99618 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.36■□□□□ 0.85
CDCA3Q99618 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.36■□□□□ 0.85
CDCA3Q99618 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.36■□□□□ 0.85
CDCA3Q99618 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.36■□□□□ 0.85
CDCA3Q99618 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.36■□□□□ 0.85
CDCA3Q99618 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.36■□□□□ 0.85
CDCA3Q99618 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.36■□□□□ 0.85
CDCA3Q99618 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CDCA3Q99618 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.36■□□□□ 0.85
CDCA3Q99618 AC083849.1-201ENST00000615227 514 ntBASIC20.36■□□□□ 0.85
CDCA3Q99618 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CDCA3Q99618 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CDCA3Q99618 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDCA3Q99618 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.35■□□□□ 0.85
CDCA3Q99618 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDCA3Q99618 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.35■□□□□ 0.85
CDCA3Q99618 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.35■□□□□ 0.85
CDCA3Q99618 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDCA3Q99618 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.35■□□□□ 0.85
CDCA3Q99618 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.35■□□□□ 0.85
CDCA3Q99618 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDCA3Q99618 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CDCA3Q99618 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.34■□□□□ 0.85
CDCA3Q99618 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDCA3Q99618 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.34■□□□□ 0.85
CDCA3Q99618 HYMAI.1-201ENST00000620949 238 ntBASIC20.34■□□□□ 0.85
CDCA3Q99618 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDCA3Q99618 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
CDCA3Q99618 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDCA3Q99618 LINC01311-201ENST00000565162 1445 ntBASIC20.34■□□□□ 0.85
CDCA3Q99618 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDCA3Q99618 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDCA3Q99618 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDCA3Q99618 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.34■□□□□ 0.85
CDCA3Q99618 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
CDCA3Q99618 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.33■□□□□ 0.85
CDCA3Q99618 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDCA3Q99618 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDCA3Q99618 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDCA3Q99618 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDCA3Q99618 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDCA3Q99618 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.33■□□□□ 0.85
CDCA3Q99618 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDCA3Q99618 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.33■□□□□ 0.85
CDCA3Q99618 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.33■□□□□ 0.85
CDCA3Q99618 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.33■□□□□ 0.85
CDCA3Q99618 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.33■□□□□ 0.85
CDCA3Q99618 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.33■□□□□ 0.85
CDCA3Q99618 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDCA3Q99618 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDCA3Q99618 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDCA3Q99618 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
CDCA3Q99618 BX119927.1-201ENST00000636596 1552 ntBASIC20.33■□□□□ 0.84
CDCA3Q99618 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.33■□□□□ 0.84
CDCA3Q99618 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
CDCA3Q99618 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.32■□□□□ 0.84
CDCA3Q99618 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDCA3Q99618 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms