Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 C1QL1P1-201ENST00000568105 661 ntBASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 IFNL4P1-201ENST00000607083 540 ntBASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSMD1Q96PZ7 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 AC005229.4-201ENST00000610085 2198 ntBASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 AP000523.1-201ENST00000398242 1049 ntBASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 FAAHP1-202ENST00000446499 1238 ntBASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSMD1Q96PZ7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 GCSHP2-201ENST00000560971 527 ntBASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AL023973.1-201ENST00000624619 620 ntBASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AL121603.2-201ENST00000557373 2117 ntBASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AC004870.1-201ENST00000315132 882 ntBASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AL645929.1-201ENST00000420084 975 ntBASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AP002383.4-201ENST00000442518 975 ntBASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSMD1Q96PZ7 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 HLA-A-201ENST00000376802 1334 ntBASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSMD1Q96PZ7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms