Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 AP002982.1-201ENST00000492365 877 ntBASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLIP3Q96DZ5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 AL355355.2-201ENST00000442321 338 ntBASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 CD177P1-201ENST00000606252 935 ntBASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 AP006587.1-201ENST00000534129 1502 ntBASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLIP3Q96DZ5 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
CLIP3Q96DZ5 FEM1AP1-201ENST00000431297 1995 ntBASIC18.77■□□□□ 0.59
CLIP3Q96DZ5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
CLIP3Q96DZ5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CLIP3Q96DZ5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 BX088651.1-201ENST00000540551 451 ntBASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 AC026471.5-201ENST00000615068 467 ntBASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLIP3Q96DZ5 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 FAM197Y1-201ENST00000421178 764 ntBASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 AC073195.1-201ENST00000607241 877 ntBASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms