Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 AL121912.1-201ENST00000603683 238 ntBASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMC1BQ8NDV3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMC1BQ8NDV3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 RASA4DP-201ENST00000460726 1199 ntBASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 KRT18P31-201ENST00000506277 1292 ntBASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 PNN-202ENST00000553331 656 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC23.16■■□□□ 1.3
SMC1BQ8NDV3 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
SMC1BQ8NDV3 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SMC1BQ8NDV3 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
SMC1BQ8NDV3 AC022898.2-201ENST00000616822 1312 ntBASIC23.14■■□□□ 1.3
SMC1BQ8NDV3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.3
SMC1BQ8NDV3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 AC092597.1-201ENST00000487352 616 ntBASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 KRT8P26-201ENST00000534154 1276 ntBASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms