Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 AP001271.2-201ENST00000624018 1556 ntBASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC25.76■■□□□ 1.71
USHBP1Q8N6Y0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 COPE-203ENST00000351079 907 ntTSL 2 BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USHBP1Q8N6Y0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 KRT8P41-201ENST00000533985 1514 ntBASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 RNF152P1-201ENST00000397754 604 ntBASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 AL031133.1-201ENST00000406807 723 ntBASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USHBP1Q8N6Y0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 FAM8A6P-201ENST00000407496 1135 ntBASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 AC011558.1-201ENST00000623459 338 ntBASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 AC141257.4-201ENST00000634557 245 ntBASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 AC136944.6-201ENST00000634818 245 ntBASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
USHBP1Q8N6Y0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 UPK3BP1-201ENST00000428678 509 ntBASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 NMU-205ENST00000511469 756 ntTSL 3 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USHBP1Q8N6Y0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 TSPY5P-201ENST00000426936 936 ntBASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 SAPCD2P2-201ENST00000431719 1174 ntBASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 COX11P1-201ENST00000489116 835 ntBASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 AC010653.2-201ENST00000623505 997 ntBASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
USHBP1Q8N6Y0 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
USHBP1Q8N6Y0 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
USHBP1Q8N6Y0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
USHBP1Q8N6Y0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.71
USHBP1Q8N6Y0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms