Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 PGM5P4-201ENST00000421970 445 ntBASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 AL591742.1-201ENST00000604433 565 ntBASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 OR10C1-204ENST00000622521 1039 ntBASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.09■□□□□ 0.49
DEPDC4Q8N2C3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
DEPDC4Q8N2C3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 AC091799.1-201ENST00000422823 811 ntBASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 TSPY6P-201ENST00000448518 926 ntBASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 AC243732.1-201ENST00000612648 864 ntBASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 BCL2-203ENST00000589955 5011 ntBASIC18.08■□□□□ 0.48
DEPDC4Q8N2C3 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 AC068338.2-201ENST00000563278 1430 ntBASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 NEFHP1-201ENST00000412845 2629 ntBASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 AL050303.2-201ENST00000619798 666 ntBASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
DEPDC4Q8N2C3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
DEPDC4Q8N2C3 RBM17P2-201ENST00000616397 1405 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms