Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BEST3Q8N1M1 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.09■□□□□ 0.49
BEST3Q8N1M1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 AC073314.1-201ENST00000568729 2216 ntBASIC18.09■□□□□ 0.49
BEST3Q8N1M1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 TUBB8P6-201ENST00000436895 1288 ntBASIC18.09■□□□□ 0.49
BEST3Q8N1M1 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 KRT18P16-201ENST00000510337 1294 ntBASIC18.09■□□□□ 0.49
BEST3Q8N1M1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 REXO1L10P-201ENST00000615707 1290 ntBASIC18.09■□□□□ 0.49
BEST3Q8N1M1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BEST3Q8N1M1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.08■□□□□ 0.49
BEST3Q8N1M1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 RBM17P1-201ENST00000453646 1190 ntBASIC18.08■□□□□ 0.48
BEST3Q8N1M1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
BEST3Q8N1M1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BEST3Q8N1M1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
BEST3Q8N1M1 FEM1AP1-201ENST00000431297 1995 ntBASIC18.06■□□□□ 0.48
BEST3Q8N1M1 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms