Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 AC091076.1-201ENST00000610741 619 ntBASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 AL023803.3-201ENST00000615559 522 ntBASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NPAS3Q8IXF0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 AL031133.1-201ENST00000406807 723 ntBASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 COX11P1-201ENST00000489116 835 ntBASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.2■□□□□ 0.82
NPAS3Q8IXF0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 TSPY5P-201ENST00000426936 936 ntBASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 AC141257.4-201ENST00000634557 245 ntBASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 AC136944.6-201ENST00000634818 245 ntBASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NPAS3Q8IXF0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 TSPY17P-201ENST00000450329 467 ntBASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 AL160286.2-201ENST00000567150 934 ntBASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NPAS3Q8IXF0 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.17■□□□□ 0.82
NPAS3Q8IXF0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NPAS3Q8IXF0 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NPAS3Q8IXF0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPAS3Q8IXF0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NPAS3Q8IXF0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms