Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF3Q68DE3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.76■□□□□ 0.27
USF3Q68DE3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.76■□□□□ 0.27
USF3Q68DE3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
USF3Q68DE3 KRT8P20-201ENST00000423953 1409 ntBASIC16.76■□□□□ 0.27
USF3Q68DE3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF3Q68DE3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF3Q68DE3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF3Q68DE3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.76■□□□□ 0.27
USF3Q68DE3 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.76■□□□□ 0.27
USF3Q68DE3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.76■□□□□ 0.27
USF3Q68DE3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.76■□□□□ 0.27
USF3Q68DE3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.76■□□□□ 0.27
USF3Q68DE3 TERF1P1-201ENST00000311003 1181 ntBASIC16.76■□□□□ 0.27
USF3Q68DE3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF3Q68DE3 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
USF3Q68DE3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.76■□□□□ 0.27
USF3Q68DE3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.76■□□□□ 0.27
USF3Q68DE3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.76■□□□□ 0.27
USF3Q68DE3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.76■□□□□ 0.27
USF3Q68DE3 AC005363.2-201ENST00000618631 242 ntBASIC16.76■□□□□ 0.27
USF3Q68DE3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.75■□□□□ 0.27
USF3Q68DE3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
USF3Q68DE3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.75■□□□□ 0.27
USF3Q68DE3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.75■□□□□ 0.27
USF3Q68DE3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.75■□□□□ 0.27
USF3Q68DE3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
USF3Q68DE3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
USF3Q68DE3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF3Q68DE3 KRT8P17-201ENST00000453110 1448 ntBASIC16.75■□□□□ 0.27
USF3Q68DE3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.74■□□□□ 0.27
USF3Q68DE3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.74■□□□□ 0.27
USF3Q68DE3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.74■□□□□ 0.27
USF3Q68DE3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
USF3Q68DE3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
USF3Q68DE3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
USF3Q68DE3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
USF3Q68DE3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
USF3Q68DE3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
USF3Q68DE3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
USF3Q68DE3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF3Q68DE3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.73■□□□□ 0.27
USF3Q68DE3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.73■□□□□ 0.27
USF3Q68DE3 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.73■□□□□ 0.27
USF3Q68DE3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
USF3Q68DE3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.73■□□□□ 0.27
USF3Q68DE3 AL590326.2-201ENST00000625139 305 ntBASIC16.73■□□□□ 0.27
USF3Q68DE3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
USF3Q68DE3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.73■□□□□ 0.27
USF3Q68DE3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.73■□□□□ 0.27
USF3Q68DE3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.73■□□□□ 0.27
USF3Q68DE3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
USF3Q68DE3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USF3Q68DE3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.72■□□□□ 0.27
USF3Q68DE3 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USF3Q68DE3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USF3Q68DE3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.72■□□□□ 0.27
USF3Q68DE3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USF3Q68DE3 AC018553.1-201ENST00000616682 1458 ntBASIC16.72■□□□□ 0.27
USF3Q68DE3 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USF3Q68DE3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USF3Q68DE3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
USF3Q68DE3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.72■□□□□ 0.27
USF3Q68DE3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms