Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 RNF121-214ENST00000533380 870 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 AC116562.4-201ENST00000641316 2276 ntBASIC23.53■■□□□ 1.36
VPS53Q5VIR6 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
VPS53Q5VIR6 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 TK2-204ENST00000525974 1178 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 AP006587.1-201ENST00000534129 1502 ntBASIC23.52■■□□□ 1.36
VPS53Q5VIR6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.52■■□□□ 1.36
VPS53Q5VIR6 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.52■■□□□ 1.36
VPS53Q5VIR6 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.51■■□□□ 1.35
VPS53Q5VIR6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 NBPF21P-201ENST00000425093 1451 ntBASIC23.51■■□□□ 1.35
VPS53Q5VIR6 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AL158047.1-201ENST00000445918 881 ntBASIC23.51■■□□□ 1.35
VPS53Q5VIR6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AC133681.1-201ENST00000465482 601 ntBASIC23.51■■□□□ 1.35
VPS53Q5VIR6 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 PRKY-204ENST00000533551 1019 ntBASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AC142381.4-202ENST00000563973 229 ntBASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS53Q5VIR6 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS53Q5VIR6 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS53Q5VIR6 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms