Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC104771.1-201ENST00000603335 964 ntBASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 AC133041.1-202ENST00000642053 222 ntBASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC40Q4G0X9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 Z82202.1-201ENST00000623446 1880 ntBASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 AC069152.1-201ENST00000438030 544 ntBASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC40Q4G0X9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC40Q4G0X9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC40Q4G0X9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 AL032819.2-201ENST00000624543 2162 ntBASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 SOX15-203ENST00000570788 1093 ntBASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 AL121906.2-201ENST00000621597 723 ntBASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC40Q4G0X9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms