Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL7A1Q02388 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
COL7A1Q02388 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.01□□□□□ -0.17
COL7A1Q02388 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.01□□□□□ -0.17
COL7A1Q02388 SLC25A6P4-201ENST00000586535 553 ntBASIC14.01□□□□□ -0.17
COL7A1Q02388 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.01□□□□□ -0.17
COL7A1Q02388 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC14.01□□□□□ -0.17
COL7A1Q02388 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
COL7A1Q02388 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
COL7A1Q02388 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.01□□□□□ -0.17
COL7A1Q02388 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.01□□□□□ -0.17
COL7A1Q02388 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.01□□□□□ -0.17
COL7A1Q02388 BX119927.1-201ENST00000636596 1552 ntBASIC14.01□□□□□ -0.17
COL7A1Q02388 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 AC079781.3-201ENST00000449110 356 ntBASIC14.01□□□□□ -0.17
COL7A1Q02388 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 AC092329.2-201ENST00000598402 547 ntBASIC14.01□□□□□ -0.17
COL7A1Q02388 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.01□□□□□ -0.17
COL7A1Q02388 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL7A1Q02388 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.01□□□□□ -0.17
COL7A1Q02388 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
COL7A1Q02388 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 HLA-A-201ENST00000376802 1334 ntBASIC14□□□□□ -0.17
COL7A1Q02388 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14□□□□□ -0.17
COL7A1Q02388 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14□□□□□ -0.17
COL7A1Q02388 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14□□□□□ -0.17
COL7A1Q02388 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
COL7A1Q02388 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14□□□□□ -0.17
COL7A1Q02388 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14□□□□□ -0.17
COL7A1Q02388 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
COL7A1Q02388 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
COL7A1Q02388 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC14□□□□□ -0.17
COL7A1Q02388 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 AL662844.1-201ENST00000546340 181 ntBASIC14□□□□□ -0.17
COL7A1Q02388 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14□□□□□ -0.17
COL7A1Q02388 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14□□□□□ -0.17
COL7A1Q02388 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL7A1Q02388 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC14□□□□□ -0.17
COL7A1Q02388 PARN-205ENST00000539279 1557 ntTSL 2 BASIC13.99□□□□□ -0.17
COL7A1Q02388 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.99□□□□□ -0.17
COL7A1Q02388 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.99□□□□□ -0.17
COL7A1Q02388 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
COL7A1Q02388 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
COL7A1Q02388 ILF2-202ENST00000368681 726 ntTSL 2 BASIC13.99□□□□□ -0.17
COL7A1Q02388 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
COL7A1Q02388 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC13.99□□□□□ -0.17
COL7A1Q02388 AP002383.4-201ENST00000442518 975 ntBASIC13.99□□□□□ -0.17
COL7A1Q02388 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC13.99□□□□□ -0.17
COL7A1Q02388 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC13.99□□□□□ -0.17
COL7A1Q02388 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 AC233723.2-201ENST00000623798 2106 ntBASIC13.99□□□□□ -0.17
COL7A1Q02388 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 AC016734.2-201ENST00000624325 1377 ntBASIC13.99□□□□□ -0.17
COL7A1Q02388 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC13.99□□□□□ -0.17
COL7A1Q02388 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.99□□□□□ -0.17
COL7A1Q02388 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL7A1Q02388 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL7A1Q02388 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13.98□□□□□ -0.17
COL7A1Q02388 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.98□□□□□ -0.17
COL7A1Q02388 AL645929.1-201ENST00000420084 975 ntBASIC13.98□□□□□ -0.17
COL7A1Q02388 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC13.98□□□□□ -0.17
COL7A1Q02388 TUBB8P6-201ENST00000436895 1288 ntBASIC13.98□□□□□ -0.17
COL7A1Q02388 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC13.98□□□□□ -0.17
COL7A1Q02388 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.98□□□□□ -0.17
COL7A1Q02388 MPI-205ENST00000562606 1052 ntTSL 3 BASIC13.98□□□□□ -0.17
COL7A1Q02388 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC13.98□□□□□ -0.17
COL7A1Q02388 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.98□□□□□ -0.17
COL7A1Q02388 WWC2-AS2-201ENST00000578387 2183 ntBASIC13.98□□□□□ -0.17
COL7A1Q02388 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL7A1Q02388 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms