Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.24■□□□□ 0.67
SRP54P61011 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SRP54P61011 AC012306.2-201ENST00000609350 630 ntBASIC19.24■□□□□ 0.67
SRP54P61011 AC131212.4-201ENST00000623606 975 ntBASIC19.24■□□□□ 0.67
SRP54P61011 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.24■□□□□ 0.67
SRP54P61011 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SRP54P61011 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SRP54P61011 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.24■□□□□ 0.67
SRP54P61011 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SRP54P61011 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SRP54P61011 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SRP54P61011 AC138932.1-201ENST00000534164 6830 ntBASIC19.24■□□□□ 0.67
SRP54P61011 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SRP54P61011 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SRP54P61011 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 FSCN1P1-201ENST00000568912 1481 ntBASIC19.23■□□□□ 0.67
SRP54P61011 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.23■□□□□ 0.67
SRP54P61011 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.23■□□□□ 0.67
SRP54P61011 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.23■□□□□ 0.67
SRP54P61011 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
SRP54P61011 GABARAPL3-202ENST00000624044 1851 ntBASIC19.23■□□□□ 0.67
SRP54P61011 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.23■□□□□ 0.67
SRP54P61011 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SRP54P61011 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SRP54P61011 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SRP54P61011 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SRP54P61011 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 AL162377.1-201ENST00000618844 1793 ntBASIC19.22■□□□□ 0.67
SRP54P61011 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.22■□□□□ 0.67
SRP54P61011 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 AC004980.1-204ENST00000429707 299 ntBASIC19.22■□□□□ 0.67
SRP54P61011 FAM210CP-201ENST00000445714 574 ntBASIC19.22■□□□□ 0.67
SRP54P61011 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.22■□□□□ 0.67
SRP54P61011 MIR6786-201ENST00000616843 113 ntBASIC19.22■□□□□ 0.67
SRP54P61011 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.22■□□□□ 0.67
SRP54P61011 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.22■□□□□ 0.67
SRP54P61011 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.22■□□□□ 0.67
SRP54P61011 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SRP54P61011 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SRP54P61011 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SRP54P61011 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SRP54P61011 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SRP54P61011 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.21■□□□□ 0.67
SRP54P61011 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SRP54P61011 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.21■□□□□ 0.67
SRP54P61011 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.21■□□□□ 0.67
SRP54P61011 KRT8P9-201ENST00000558927 1449 ntBASIC19.21■□□□□ 0.67
SRP54P61011 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.21■□□□□ 0.67
SRP54P61011 HLA-A-209ENST00000638375 975 ntBASIC19.21■□□□□ 0.67
SRP54P61011 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SRP54P61011 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.2■□□□□ 0.66
SRP54P61011 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.2■□□□□ 0.66
SRP54P61011 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 KRT8P8-201ENST00000434750 1448 ntBASIC19.2■□□□□ 0.66
SRP54P61011 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.2■□□□□ 0.66
SRP54P61011 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SRP54P61011 MESTP1-201ENST00000404287 994 ntBASIC19.2■□□□□ 0.66
SRP54P61011 AL390955.1-201ENST00000428694 934 ntBASIC19.2■□□□□ 0.66
SRP54P61011 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.2■□□□□ 0.66
SRP54P61011 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.2■□□□□ 0.66
SRP54P61011 KRT18P21-201ENST00000515767 1272 ntBASIC19.2■□□□□ 0.66
SRP54P61011 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 FITM1-202ENST00000559294 800 ntBASIC19.2■□□□□ 0.66
SRP54P61011 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.2■□□□□ 0.66
SRP54P61011 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms