Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP001271.2-201ENST00000624018 1556 ntBASIC14.64□□□□□ -0.07
FOXA3P55318 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA3P55318 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
FOXA3P55318 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
FOXA3P55318 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA3P55318 AC020916.1-201ENST00000587762 1774 ntBASIC14.63□□□□□ -0.07
FOXA3P55318 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA3P55318 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 GUSBP5-201ENST00000418136 578 ntBASIC14.63□□□□□ -0.07
FOXA3P55318 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC14.63□□□□□ -0.07
FOXA3P55318 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC14.63□□□□□ -0.07
FOXA3P55318 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA3P55318 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA3P55318 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC14.63□□□□□ -0.07
FOXA3P55318 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA3P55318 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
FOXA3P55318 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA3P55318 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
FOXA3P55318 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA3P55318 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA3P55318 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA3P55318 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA3P55318 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
FOXA3P55318 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.62□□□□□ -0.07
FOXA3P55318 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 SAPCD2P1-201ENST00000395413 1184 ntBASIC14.62□□□□□ -0.07
FOXA3P55318 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
FOXA3P55318 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
FOXA3P55318 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC14.62□□□□□ -0.07
FOXA3P55318 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA3P55318 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA3P55318 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
FOXA3P55318 AL358852.1-201ENST00000623174 1268 ntBASIC14.62□□□□□ -0.07
FOXA3P55318 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA3P55318 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC14.62□□□□□ -0.07
FOXA3P55318 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
FOXA3P55318 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA3P55318 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 AC106820.2-201ENST00000563775 3264 ntBASIC14.61□□□□□ -0.07
FOXA3P55318 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA3P55318 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA3P55318 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA3P55318 AC007322.3-201ENST00000426526 701 ntBASIC14.61□□□□□ -0.07
FOXA3P55318 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA3P55318 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA3P55318 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA3P55318 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms