Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
LIMK1P53667 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
LIMK1P53667 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIMK1P53667 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LIMK1P53667 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 RNF165-205ENST00000588679 2904 ntBASIC19.29■□□□□ 0.68
LIMK1P53667 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMK1P53667 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMK1P53667 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMK1P53667 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.29■□□□□ 0.68
LIMK1P53667 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMK1P53667 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
LIMK1P53667 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMK1P53667 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.29■□□□□ 0.68
LIMK1P53667 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
LIMK1P53667 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
LIMK1P53667 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMK1P53667 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
LIMK1P53667 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMK1P53667 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMK1P53667 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMK1P53667 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMK1P53667 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMK1P53667 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMK1P53667 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMK1P53667 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LIMK1P53667 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.28■□□□□ 0.68
LIMK1P53667 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMK1P53667 AC096733.2-201ENST00000609937 1394 ntBASIC19.28■□□□□ 0.68
LIMK1P53667 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMK1P53667 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.28■□□□□ 0.68
LIMK1P53667 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMK1P53667 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
LIMK1P53667 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
LIMK1P53667 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
LIMK1P53667 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMK1P53667 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIMK1P53667 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMK1P53667 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMK1P53667 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.27■□□□□ 0.68
LIMK1P53667 AC007663.1-201ENST00000438948 1240 ntBASIC19.27■□□□□ 0.68
LIMK1P53667 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMK1P53667 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMK1P53667 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
LIMK1P53667 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMK1P53667 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMK1P53667 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
LIMK1P53667 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMK1P53667 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMK1P53667 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMK1P53667 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.67
LIMK1P53667 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.27■□□□□ 0.67
LIMK1P53667 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
LIMK1P53667 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMK1P53667 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LIMK1P53667 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMK1P53667 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 AC008622.2-201ENST00000617006 1229 ntBASIC19.26■□□□□ 0.67
LIMK1P53667 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMK1P53667 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMK1P53667 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 AC011484.1-201ENST00000377652 1995 ntBASIC19.26■□□□□ 0.67
LIMK1P53667 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMK1P53667 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LIMK1P53667 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMK1P53667 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.25■□□□□ 0.67
LIMK1P53667 AP006587.1-201ENST00000534129 1502 ntBASIC19.25■□□□□ 0.67
LIMK1P53667 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms