Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.03■■□□□ 1.12
CIITAP33076 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CIITAP33076 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.03■■□□□ 1.12
CIITAP33076 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.03■■□□□ 1.12
CIITAP33076 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.03■■□□□ 1.12
CIITAP33076 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CIITAP33076 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CIITAP33076 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.03■■□□□ 1.12
CIITAP33076 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
CIITAP33076 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CIITAP33076 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CIITAP33076 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.02■■□□□ 1.12
CIITAP33076 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
CIITAP33076 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC22.02■■□□□ 1.12
CIITAP33076 NUDT16P1-203ENST00000513809 620 ntBASIC22.02■■□□□ 1.12
CIITAP33076 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.02■■□□□ 1.12
CIITAP33076 AC026271.3-201ENST00000571884 352 ntBASIC22.02■■□□□ 1.12
CIITAP33076 MIR4785-201ENST00000585005 73 ntBASIC22.02■■□□□ 1.12
CIITAP33076 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC22.02■■□□□ 1.12
CIITAP33076 AC026471.5-201ENST00000615068 467 ntBASIC22.02■■□□□ 1.12
CIITAP33076 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CIITAP33076 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
CIITAP33076 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.02■■□□□ 1.11
CIITAP33076 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.11
CIITAP33076 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.01■■□□□ 1.11
CIITAP33076 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.01■■□□□ 1.11
CIITAP33076 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CIITAP33076 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CIITAP33076 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC22.01■■□□□ 1.11
CIITAP33076 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CIITAP33076 AC116562.2-201ENST00000507042 360 ntBASIC22.01■■□□□ 1.11
CIITAP33076 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.01■■□□□ 1.11
CIITAP33076 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.01■■□□□ 1.11
CIITAP33076 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CIITAP33076 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.01■■□□□ 1.11
CIITAP33076 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CIITAP33076 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
CIITAP33076 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.01■■□□□ 1.11
CIITAP33076 KRT17P2-201ENST00000300992 1314 ntBASIC22.01■■□□□ 1.11
CIITAP33076 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC22.01■■□□□ 1.11
CIITAP33076 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.01■■□□□ 1.11
CIITAP33076 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.01■■□□□ 1.11
CIITAP33076 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22■■□□□ 1.11
CIITAP33076 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
CIITAP33076 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC22■■□□□ 1.11
CIITAP33076 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22■■□□□ 1.11
CIITAP33076 AC131212.4-201ENST00000623606 975 ntBASIC22■■□□□ 1.11
CIITAP33076 AL031985.4-201ENST00000642138 673 ntBASIC22■■□□□ 1.11
CIITAP33076 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22■■□□□ 1.11
CIITAP33076 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
CIITAP33076 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 PCDHAC2-203ENST00000615316 3011 ntBASIC22■■□□□ 1.11
CIITAP33076 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CIITAP33076 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.99■■□□□ 1.11
CIITAP33076 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.99■■□□□ 1.11
CIITAP33076 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.99■■□□□ 1.11
CIITAP33076 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.99■■□□□ 1.11
CIITAP33076 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.99■■□□□ 1.11
CIITAP33076 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
CIITAP33076 MESTP1-201ENST00000404287 994 ntBASIC21.99■■□□□ 1.11
CIITAP33076 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.99■■□□□ 1.11
CIITAP33076 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.99■■□□□ 1.11
CIITAP33076 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
CIITAP33076 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.99■■□□□ 1.11
CIITAP33076 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms