Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.06■□□□□ 0.32
COL8A1P27658 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL8A1P27658 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
COL8A1P27658 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.06■□□□□ 0.32
COL8A1P27658 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.06■□□□□ 0.32
COL8A1P27658 YBX1P10-201ENST00000444752 975 ntBASIC17.06■□□□□ 0.32
COL8A1P27658 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL8A1P27658 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.06■□□□□ 0.32
COL8A1P27658 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 AC008622.2-201ENST00000617006 1229 ntBASIC17.06■□□□□ 0.32
COL8A1P27658 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL8A1P27658 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.06■□□□□ 0.32
COL8A1P27658 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.05■□□□□ 0.32
COL8A1P27658 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL8A1P27658 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.05■□□□□ 0.32
COL8A1P27658 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.05■□□□□ 0.32
COL8A1P27658 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.05■□□□□ 0.32
COL8A1P27658 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.05■□□□□ 0.32
COL8A1P27658 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
COL8A1P27658 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 NPAP1P7-201ENST00000613027 823 ntBASIC17.05■□□□□ 0.32
COL8A1P27658 AL023803.3-201ENST00000615559 522 ntBASIC17.05■□□□□ 0.32
COL8A1P27658 MIR2861-201ENST00000636310 90 ntBASIC17.05■□□□□ 0.32
COL8A1P27658 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.05■□□□□ 0.32
COL8A1P27658 AC011484.1-201ENST00000377652 1995 ntBASIC17.05■□□□□ 0.32
COL8A1P27658 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.05■□□□□ 0.32
COL8A1P27658 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.05■□□□□ 0.32
COL8A1P27658 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL8A1P27658 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL8A1P27658 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 PTBP1P-201ENST00000554374 1601 ntBASIC17.04■□□□□ 0.32
COL8A1P27658 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.04■□□□□ 0.32
COL8A1P27658 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
COL8A1P27658 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.04■□□□□ 0.32
COL8A1P27658 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.04■□□□□ 0.32
COL8A1P27658 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL8A1P27658 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL8A1P27658 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.04■□□□□ 0.32
COL8A1P27658 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.03■□□□□ 0.32
COL8A1P27658 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.03■□□□□ 0.32
COL8A1P27658 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.03■□□□□ 0.32
COL8A1P27658 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
COL8A1P27658 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 TSPY17P-201ENST00000450329 467 ntBASIC17.03■□□□□ 0.32
COL8A1P27658 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.03■□□□□ 0.32
COL8A1P27658 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 AC092329.2-201ENST00000598402 547 ntBASIC17.03■□□□□ 0.32
COL8A1P27658 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 KRT8P20-201ENST00000423953 1409 ntBASIC17.03■□□□□ 0.32
COL8A1P27658 LINC01311-201ENST00000565162 1445 ntBASIC17.03■□□□□ 0.32
COL8A1P27658 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms