Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.6■□□□□ 0.89
BDNFP23560 AL031985.4-201ENST00000642138 673 ntBASIC20.6■□□□□ 0.89
BDNFP23560 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.6■□□□□ 0.89
BDNFP23560 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.6■□□□□ 0.89
BDNFP23560 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.6■□□□□ 0.89
BDNFP23560 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 AC004980.1-204ENST00000429707 299 ntBASIC20.59■□□□□ 0.89
BDNFP23560 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.59■□□□□ 0.89
BDNFP23560 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.59■□□□□ 0.89
BDNFP23560 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BDNFP23560 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.59■□□□□ 0.89
BDNFP23560 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 AC116562.2-201ENST00000507042 360 ntBASIC20.58■□□□□ 0.89
BDNFP23560 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.58■□□□□ 0.89
BDNFP23560 AC131212.4-201ENST00000623606 975 ntBASIC20.58■□□□□ 0.89
BDNFP23560 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
BDNFP23560 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.58■□□□□ 0.89
BDNFP23560 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
BDNFP23560 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
BDNFP23560 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
BDNFP23560 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BDNFP23560 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BDNFP23560 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
BDNFP23560 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
BDNFP23560 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.57■□□□□ 0.88
BDNFP23560 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.57■□□□□ 0.88
BDNFP23560 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.57■□□□□ 0.88
BDNFP23560 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 RBM17P1-201ENST00000453646 1190 ntBASIC20.57■□□□□ 0.88
BDNFP23560 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.57■□□□□ 0.88
BDNFP23560 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.57■□□□□ 0.88
BDNFP23560 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BDNFP23560 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
BDNFP23560 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.56■□□□□ 0.88
BDNFP23560 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.56■□□□□ 0.88
BDNFP23560 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.56■□□□□ 0.88
BDNFP23560 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.56■□□□□ 0.88
BDNFP23560 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
BDNFP23560 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.56■□□□□ 0.88
BDNFP23560 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.56■□□□□ 0.88
BDNFP23560 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.56■□□□□ 0.88
BDNFP23560 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
BDNFP23560 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.56■□□□□ 0.88
BDNFP23560 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.56■□□□□ 0.88
BDNFP23560 AC079598.2-202ENST00000546624 1451 ntBASIC20.56■□□□□ 0.88
BDNFP23560 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BDNFP23560 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
BDNFP23560 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 LINC01465-201ENST00000408887 1940 ntBASIC20.55■□□□□ 0.88
BDNFP23560 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
BDNFP23560 AC073130.3-201ENST00000624389 2278 ntBASIC20.55■□□□□ 0.88
BDNFP23560 UNC93B2-201ENST00000285383 730 ntBASIC20.55■□□□□ 0.88
BDNFP23560 MESTP1-201ENST00000404287 994 ntBASIC20.55■□□□□ 0.88
BDNFP23560 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms